| FROGS: find, rapidly, OTUs with galaxy solution F Escudié, L Auer, M Bernard, M Mariadassou, L Cauquil, K Vidal, ... Bioinformatics 34 (8), 1287-1294, 2018 | 825 | 2018 |
| Uncovering latent structure in valued graphs: a variational approach M Mariadassou, S Robin, C Vacher | 263 | 2010 |
| Gut bacteria are critical for optimal muscle function: a potential link with glucose homeostasis K Nay, M Jollet, B Goustard, N Baati, B Vernus, M Pontones, ... American Journal of Physiology-Endocrinology and Metabolism 317 (1), E158-E171, 2019 | 209 | 2019 |
| Beneficial metabolic effects of selected probiotics on diet‐induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota J Alard, V Lehrter, M Rhimi, I Mangin, V Peucelle, AL Abraham, ... Environmental microbiology 18 (5), 1484-1497, 2016 | 192 | 2016 |
| Quantitative prediction of genome-wide resource allocation in bacteria A Goelzer, J Muntel, V Chubukov, M Jules, E Prestel, R Nölker, ... Metabolic engineering 32, 232-243, 2015 | 163 | 2015 |
| Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes JK Cornuault, MA Petit, M Mariadassou, L Benevides, E Moncaut, ... Microbiome 6, 1-14, 2018 | 125 | 2018 |
| Multiple comparative metagenomics using multiset k-mer counting G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ... PeerJ Computer Science 2, e94, 2016 | 119 | 2016 |
| Inference of adaptive shifts for multivariate correlated traits P Bastide, C Ané, S Robin, M Mariadassou Systematic Biology 67 (4), 662-680, 2018 | 105 | 2018 |
| Variational inference for sparse network reconstruction from count data J Chiquet, S Robin, M Mariadassou International Conference on Machine Learning, 1162-1171, 2019 | 102 | 2019 |
| Microbial ecosystems are dominated by specialist taxa M Mariadassou, S Pichon, D Ebert Ecology Letters 18 (9), 974-982, 2015 | 102 | 2015 |
| Variational inference for probabilistic Poisson PCA J Chiquet, M Mariadassou, S Robin | 94 | 2018 |
| Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems DJ Richter, R Watteaux, T Vannier, J Leconte, P Frémont, G Reygondeau, ... elife 11, e78129, 2022 | 91 | 2022 |
| Olfactory epithelium changes in germfree mice A François, D Grebert, M Rhimi, M Mariadassou, L Naudon, S Rabot, ... Scientific reports 6 (1), 24687, 2016 | 77 | 2016 |
| Local and Systemic Immune Mechanisms Underlying the Anti-Colitis Effects of the Dairy Bacterium Lactobacillus delbrueckii C Santos Rocha, AC Gomes-Santos, T Garcias Moreira, M de Azevedo, ... PLoS One 9 (1), e85923, 2014 | 72 | 2014 |
| Analysis of large 16S rRNA Illumina data sets: Impact of singleton read filtering on microbial community description L Auer, M Mariadassou, M O'Donohue, C Klopp, G Hernandez‐Raquet Molecular ecology resources 17 (6), e122-e132, 2017 | 68 | 2017 |
| Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions E Lejal, J Chiquet, J Aubert, S Robin, A Estrada-Peña, O Rue, C Midoux, ... Microbiome 9, 1-20, 2021 | 67 | 2021 |
| Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study SM Deutsch, M Mariadassou, P Nicolas, S Parayre, R Le Guellec, ... Scientific reports 7 (1), 46409, 2017 | 61 | 2017 |
| The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances J Chiquet, M Mariadassou, S Robin Frontiers in Ecology and Evolution 9, 588292, 2021 | 58 | 2021 |
| Shifts in the temperature‐sensitive periods for spring phenology in European beech and pedunculate oak clones across latitudes and over recent decades B Wenden, M Mariadassou, FM Chmielewski, Y Vitasse Global change biology 26 (3), 1808-1819, 2020 | 56 | 2020 |
| Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism X Zhang, A Grosfeld, E Williams, D Vasiliauskas, S Barretto, L Smith, ... The FASEB Journal 33 (6), 7126, 2019 | 53 | 2019 |