| Characterization of stress‐responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features C Di, J Yuan, Y Wu, J Li, H Lin, L Hu, T Zhang, Y Qi, MB Gerstein, Y Guo, ... The Plant Journal 80 (5), 848-861, 2014 | 316 | 2014 |
| Recurrently deregulated lncRNAs in hepatocellular carcinoma Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ... Nature communications 8 (1), 14421, 2017 | 303 | 2017 |
| Stress‐responsive regulation of long non‐coding RNA polyadenylation in Oryza sativa J Yuan, J Li, Y Yang, C Tan, Y Zhu, L Hu, Y Qi, ZJ Lu The Plant Journal 93 (5), 814-827, 2018 | 103 | 2018 |
| Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana J Yuan, Y Zhang, J Dong, Y Sun, BL Lim, D Liu, ZJ Lu BMC genomics 17, 1-16, 2016 | 97 | 2016 |
| Mitochondrial trafficking and processing of telomerase RNA TERC Y Cheng, P Liu, Q Zheng, G Gao, J Yuan, P Wang, J Huang, L Xie, X Lu, ... Cell reports 24 (10), 2589-2595, 2018 | 76 | 2018 |
| Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa Z Tang, Y Wu, Y Yang, YCT Yang, Z Wang, J Yuan, Y Yang, C Hua, X Fan, ... Scientific Reports 7 (1), 43166, 2017 | 76 | 2017 |
| Genome-wide germline correlates of the epigenetic landscape of prostate cancer KE Houlahan, YJ Shiah, A Gusev, J Yuan, M Ahmed, A Shetty, ... Nature medicine 25 (10), 1615-1626, 2019 | 62 | 2019 |
| The landscape of RNA polymerase II–associated chromatin interactions in prostate cancer SG Ramanand, Y Chen, J Yuan, K Daescu, MBK Lambros, KE Houlahan, ... The Journal of clinical investigation 130 (8), 3987-4005, 2020 | 57 | 2020 |
| Mitochondrion-processed TERC regulates senescence without affecting telomerase activities Q Zheng, P Liu, G Gao, J Yuan, P Wang, J Huang, L Xie, X Lu, F Di, ... Protein & cell 10 (9), 631-648, 2019 | 48 | 2019 |
| Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states Y Yang, YCT Yang, J Yuan, ZJ Lu, JJ Li Nucleic acids research 45 (4), 1657-1672, 2017 | 18 | 2017 |
| scAPAatlas: an atlas of alternative polyadenylation across cell types in human and mouse X Yang, Y Tong, G Liu, J Yuan, Y Yang Nucleic Acids Research 50 (D1), D356-D364, 2022 | 11 | 2022 |
| Prostate Cancer transcriptomic regulation by the interplay of germline risk alleles, somatic mutations, and 3D genomic architecture J Yuan, KE Houlahan, SG Ramanand, S Lee, GH Baek, Y Yang, Y Chen, ... Cancer discovery 12 (12), 2838-2855, 2022 | 7 | 2022 |
| Single-cell transcriptomic analysis of the immune microenvironment in pediatric acute leukemia J Yuan, J Zhang, B Zhao, F Liu, T Liu, Y Duan, Y Chen, X Chen, Y Zou, ... Cancer Letters, 217018, 2024 | 1 | 2024 |
| InPACT: a computational method for accurate characterization of intronic polyadenylation from RNA sequencing data X Liu, H Chen, Z Li, X Yang, W Jin, Y Wang, J Zheng, L Li, C Xuan, J Yuan, ... Nature Communications 15 (1), 2583, 2024 | 1 | 2024 |
| ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features A Abbas, K Chandratre, Y Gao, J Yuan, MQ Zhang, RS Mani Genome biology 25 (1), 15, 2024 | 1 | 2024 |
| Accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features A Abbas, K Chandratre, Y Gao, J Yuan, MQ Zhang, RS Mani bioRxiv, 2022.11. 23.517572, 2022 | 1 | 2022 |
| DIPAN: Detecting personalized intronic polyadenylation derived neoantigens from RNA sequencing data X Liu, W Jin, D Bao, T He, W Wang, Z Li, X Yang, Y Tong, M Shu, Y Wang, ... Computational and Structural Biotechnology Journal 23, 2057-2066, 2024 | | 2024 |
| A compendium of genetic variations associated with promoter usage across 49 human tissues J Yuan, Y Tong, L Wang, X Yang, X Liu, M Shu, Z Li, W Jin, C Guan, ... Nature Communications 15 (1), 8758, 2024 | | 2024 |
| Comprehensive characterization of somatic mutations associated with chimeric RNAs in human cancers Y Wang, M Shu, T Wang, T He, J Yuan, Y Yang International Journal of Cancer, 2024 | | 2024 |
| An atlas of cell-type-specific interactome networks across 44 human tumor types Z Li, G Liu, X Yang, M Shu, W Jin, Y Tong, X Liu, Y Wang, J Yuan, Y Yang Genome Medicine 16 (1), 30, 2024 | | 2024 |
Zhi John LuAssociate Professor, Tsinghua University在 tsinghua.edu.cn 的電子郵件地址已通過驗證
