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Terence P Speed
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Exploration, normalization, and summaries of high density oligonucleotide array probe level data
RA Irizarry, B Hobbs, F Collin, YD Beazer‐Barclay, KJ Antonellis, U Scherf, ...
Biostatistics 4 (2), 249-264, 2003
125142003
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
BM Bolstad, RA Irizarry, M Åstrand, TP Speed
Bioinformatics 19 (2), 185-193, 2003
99962003
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
RGW Verhaak, KA Hoadley, E Purdom, V Wang, Y Qi, MD Wilkerson, ...
Cancer cell 17 (1), 98-110, 2010
81582010
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Cancer Genome Atlas Research Network Tissue source sites: Duke University ...
Nature 455 (7216), 1061-1068, 2008
75882008
Integrated genomic analyses of ovarian carcinoma
Cancer Genome Atlas Research Network
Nature 474 (7353), 609, 2011
70932011
Summaries of Affymetrix GeneChip probe level data
RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
Nucleic acids research 31 (4), e15-e15, 2003
59772003
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
Nucleic acids research 30 (4), e15-e15, 2002
44602002
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
RM Neve, K Chin, J Fridlyand, J Yeh, FL Baehner, T Fevr, L Clark, ...
Cancer cell 10 (6), 515-527, 2006
38112006
Comparison of discrimination methods for the classification of tumors using gene expression data
S Dudoit, J Fridlyand, TP Speed
Journal of the American statistical association 97 (457), 77-87, 2002
36012002
On the application of probability theory to agricultural experiments. Essay on principles. Section 9.
J Splawa-Neyman, DM Dabrowska, TP Speed
Statistical Science, 465-472, 1990
27111990
Normalization of cDNA microarray data
GK Smyth, T Speed
Methods 31 (4), 265-273, 2003
23422003
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
S Dudoit, YH Yang, MJ Callow, TP Speed
Statistica sinica, 111-139, 2002
22052002
Normalization of RNA-seq data using factor analysis of control genes or samples
D Risso, J Ngai, TP Speed, S Dudoit
Nature biotechnology 32 (9), 896-902, 2014
19062014
GOstat: find statistically overrepresented Gene Ontologies within a group of genes
T Beissbarth, TP Speed
Bioinformatics 20 (9), 1464-1465, 2004
15012004
Discrete-parameter martingales
J Neveu, TP Speed
(No Title), 1975
14811975
Design issues for cDNA microarray experiments
YH Yang, T Speed
Nature Reviews Genetics 3 (8), 579-588, 2002
11172002
Summarizing and correcting the GC content bias in high-throughput sequencing
Y Benjamini, TP Speed
Nucleic acids research 40 (10), e72-e72, 2012
10862012
Replicated microarray data
I Lönnstedt, T Speed
Statistica sinica, 31-46, 2002
9842002
Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis
P Savas, B Virassamy, C Ye, A Salim, CP Mintoff, F Caramia, R Salgado, ...
Nature medicine 24 (7), 986-993, 2018
9072018
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
7882007
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