| Aligning multiple genomic sequences with the threaded blockset aligner M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ... Genome research 14 (4), 708-715, 2004 | 2221 | 2004 |
| Comparative analyses of multi-species sequences from targeted genomic regions JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ... Nature 424 (6950), 788-793, 2003 | 787 | 2003 |
| Variant histone H2A. Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning B Guillemette, AR Bataille, N Gévry, M Adam, M Blanchette, F Robert, ... PLoS biology 3 (12), e384, 2005 | 571 | 2005 |
| The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts JR Wagner, S Busche, B Ge, T Kwan, T Pastinen, M Blanchette Genome biology 15, 1-17, 2014 | 508 | 2014 |
| Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme C Jeronimo, D Forget, A Bouchard, Q Li, G Chua, C Poitras, C Thérien, ... Molecular cell 27 (2), 262-274, 2007 | 507 | 2007 |
| The butterfly plant arms-race escalated by gene and genome duplications PP Edger, HM Heidel-Fischer, M Bekaert, J Rota, G Glöckner, AE Platts, ... Proceedings of the National Academy of Sciences 112 (27), 8362-8366, 2015 | 499 | 2015 |
| Genome-wide orchestration of cardiac functions by the orphan nuclear receptors ERRα and γ CR Dufour, BJ Wilson, JM Huss, DP Kelly, WA Alaynick, M Downes, ... Cell metabolism 5 (5), 345-356, 2007 | 490 | 2007 |
| Discovery of regulatory elements by a computational method for phylogenetic footprinting M Blanchette, M Tompa Genome research 12 (5), 739-748, 2002 | 454 | 2002 |
| The Capsella rubella genome and the genomic consequences of rapid mating system evolution T Slotte, KM Hazzouri, JA Ågren, D Koenig, F Maumus, YL Guo, K Steige, ... Nature genetics 45 (7), 831-835, 2013 | 437 | 2013 |
| Identification and characterization of multi-species conserved sequences EH Margulies, M Blanchette, D Haussler, ED Green, ... Genome research 13 (12), 2507-2518, 2003 | 435 | 2003 |
| An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ... Nature genetics 45 (8), 891-898, 2013 | 397 | 2013 |
| Reconstructing contiguous regions of an ancestral genome J Ma, L Zhang, BB Suh, BJ Raney, RC Burhans, WJ Kent, M Blanchette, ... Genome research 16 (12), 1557-1565, 2006 | 354 | 2006 |
| Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression M Blanchette, AR Bataille, X Chen, C Poitras, J Laganière, C Lefèbvre, ... Genome research 16 (5), 656-668, 2006 | 334 | 2006 |
| Multiple genome rearrangement and breakpoint phylogeny D Sankoff, M Blanchette Journal of computational biology 5 (3), 555-570, 1998 | 327 | 1998 |
| Phylo: a citizen science approach for improving multiple sequence alignment A Kawrykow, G Roumanis, A Kam, D Kwak, C Leung, C Wu, E Zarour, ... PloS one 7 (3), e31362, 2012 | 295 | 2012 |
| Global patterns of cis variation in human cells revealed by high-density allelic expression analysis B Ge, DK Pokholok, T Kwan, E Grundberg, L Morcos, DJ Verlaan, J Le, ... Nature genetics 41 (11), 1216-1222, 2009 | 269 | 2009 |
| Gene order breakpoint evidence in animal mitochondrial phylogeny M Blanchette, T Kunisawa, D Sankoff Journal of Molecular Evolution 49, 193-203, 1999 | 264 | 1999 |
| Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006 | 263* | 2006 |
| PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences S Sinha, M Blanchette, M Tompa BMC bioinformatics 5, 1-17, 2004 | 256 | 2004 |
| Algorithms for phylogenetic footprinting M Blanchette Proceedings of the fifth annual international conference on Computational …, 2001 | 244 | 2001 |
