Theo dõi
Job Dekker
Job Dekker
University of Massachusetts Medical School, Howard Hughes Medical Institute
Email được xác minh tại umassmed.edu - Trang chủ
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
175972012
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
92252009
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
61252007
Capturing chromosome conformation
J Dekker, K Rippe, M Dekker, N Kleckner
science 295 (5558), 1306-1311, 2002
43662002
Spatial partitioning of the regulatory landscape of the X-inactivation centre
EP Nora, BR Lajoie, EG Schulz, L Giorgetti, I Okamoto, N Servant, T Piolot, ...
Nature 485 (7398), 381-385, 2012
32722012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
32072012
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
24602004
Mediator and cohesin connect gene expression and chromatin architecture
MH Kagey, JJ Newman, S Bilodeau, Y Zhan, DA Orlando, NL van Berkum, ...
Nature 467 (7314), 430-435, 2010
22982010
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
KC Wang, YW Yang, B Liu, A Sanyal, R Corces-Zimmerman, Y Chen, ...
Nature 472 (7341), 120-124, 2011
22202011
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ...
Genome biology 16, 1-11, 2015
20682015
The long-range interaction landscape of gene promoters
A Sanyal, BR Lajoie, G Jain, J Dekker
Nature 489 (7414), 109-113, 2012
17312012
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
EP Nora, A Goloborodko, AL Valton, JH Gibcus, A Uebersohn, ...
Cell 169 (5), 930-944. e22, 2017
16782017
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
15842020
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
14992011
Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements
J Dostie, TA Richmond, RA Arnaout, RR Selzer, WL Lee, TA Honan, ...
Genome research 16 (10), 1299-1309, 2006
14982006
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ...
Nature methods 9 (10), 999-1003, 2012
14682012
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ...
Cell 153 (6), 1281-1295, 2013
13172013
Hi–C: a comprehensive technique to capture the conformation of genomes
JM Belton, RP McCord, JH Gibcus, N Naumova, Y Zhan, J Dekker
Methods 58 (3), 268-276, 2012
12482012
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
J Dekker, MA Marti-Renom, LA Mirny
Nature Reviews Genetics 14 (6), 390-403, 2013
12462013
Activation of proto-oncogenes by disruption of chromosome neighborhoods
D Hnisz, AS Weintraub, DS Day, AL Valton, RO Bak, CH Li, J Goldmann, ...
Science 351 (6280), 1454-1458, 2016
11462016
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