| Next‐generation sequencing technologies for environmental DNA research S Shokralla, JL Spall, JF Gibson, M Hajibabaei Molecular ecology 21 (8), 1794-1805, 2012 | 1238 | 2012 |
| Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos M Hajibabaei, S Shokralla, X Zhou, GAC Singer, DJ Baird PLoS one 6 (4), e17497, 2011 | 669 | 2011 |
| A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing P Parameswaran, R Jalili, L Tao, S Shokralla, B Gharizadeh, M Ronaghi, ... Nucleic acids research 35 (19), e130, 2007 | 486 | 2007 |
| Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease W Mottawea, CK Chiang, M Mühlbauer, AE Starr, J Butcher, T Abujamel, ... Nature communications 7 (1), 13419, 2016 | 422 | 2016 |
| Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics J Gibson, S Shokralla, TM Porter, I King, S Van Konynenburg, DH Janzen, ... Proceedings of the National Academy of Sciences 111 (22), 8007-8012, 2014 | 322 | 2014 |
| Next‐generation DNA barcoding: using next‐generation sequencing to enhance and accelerate DNA barcode capture from single specimens S Shokralla, JF Gibson, H Nikbakht, DH Janzen, W Hallwachs, ... Molecular ecology resources 14 (5), 892-901, 2014 | 307 | 2014 |
| Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform S Shokralla, TM Porter, JF Gibson, R Dobosz, DH Janzen, W Hallwachs, ... Scientific reports 5 (1), 9687, 2015 | 293 | 2015 |
| Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol M Hajibabaei, JL Spall, S Shokralla, S van Konynenburg BMC ecology 12, 1-10, 2012 | 244 | 2012 |
| A DNA mini-barcoding system for authentication of processed fish products S Shokralla, RS Hellberg, SM Handy, I King, M Hajibabaei Scientific reports 5 (1), 15894, 2015 | 238 | 2015 |
| Large-scale biomonitoring of remote and threatened ecosystems via high-throughput sequencing JF Gibson, S Shokralla, C Curry, DJ Baird, WA Monk, I King, M Hajibabaei PloS one 10 (10), e0138432, 2015 | 199 | 2015 |
| Large-scale monitoring of plants through environmental DNA metabarcoding of soil: recovery, resolution, and annotation of four DNA markers NA Fahner, S Shokralla, DJ Baird, M Hajibabaei PloS one 11 (6), e0157505, 2016 | 171 | 2016 |
| DNA barcodes for everyday life: routine authentication of natural health products LJ Wallace, SMAL Boilard, SHC Eagle, JL Spall, S Shokralla, ... Food Research International 49 (1), 446-452, 2012 | 165 | 2012 |
| Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples I Bista, GR Carvalho, M Tang, K Walsh, X Zhou, M Hajibabaei, ... Molecular Ecology Resources 18 (5), 1020-1034, 2018 | 158 | 2018 |
| Direct PCR amplification and sequencing of specimens’ DNA from preservative ethanol S Shokralla, GAC Singer, M Hajibabaei BioTechniques 48 (3), 305-306, 2010 | 114 | 2010 |
| Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1 F Babrzadeh, R Jalili, C Wang, S Shokralla, S Pierce, A Robinson-Mosher, ... Molecular genetics and genomics 287, 485-494, 2012 | 111 | 2012 |
| DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities J Lobo, S Shokralla, MH Costa, M Hajibabaei, FO Costa Scientific reports 7 (1), 15618, 2017 | 108 | 2017 |
| Enhancing mint and basil oil composition and antibacterial activity using seaweed extracts HO Elansary, K Yessoufou, S Shokralla, EA Mahmoud, ... Industrial Crops and Products 92, 50-56, 2016 | 108 | 2016 |
| Quorum Sensing Inhibiting Activity of Streptomyces coelicoflavus Isolated from Soil R Hassan, MI Shaaban, FM Abdel Bar, AM El-Mahdy, S Shokralla Frontiers in microbiology 7, 659, 2016 | 106 | 2016 |
| Pyrosequencing for mini-barcoding of fresh and old museum specimens S Shokralla, X Zhou, DH Janzen, W Hallwachs, JF Landry, LM Jacobus, ... PLoS One 6 (7), e21252, 2011 | 93 | 2011 |
| Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose? CJ Curry, JF Gibson, S Shokralla, M Hajibabaei, DJ Baird Freshwater Science 37 (1), 178-189, 2018 | 88 | 2018 |