| Comprehensive integration of single-cell data T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck, ... cell 177 (7), 1888-1902. e21, 2019 | 12878 | 2019 |
| Integrating single-cell transcriptomic data across different conditions, technologies, and species A Butler, P Hoffman, P Smibert, E Papalexi, R Satija Nature biotechnology 36 (5), 411-420, 2018 | 10511 | 2018 |
| Integrated analysis of multimodal single-cell data Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... Cell 184 (13), 3573-3587. e29, 2021 | 10368 | 2021 |
| Simultaneous epitope and transcriptome measurement in single cells M Stoeckius, C Hafemeister, W Stephenson, B Houck-Loomis, ... Nature methods 14 (9), 865-868, 2017 | 2871 | 2017 |
| Cell "hashing" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics M Stoeckius, S Zheng, B Houck-Loomis, S Hao, B Yeung, P Smibert, ... BioRxiv, 0, 2017 | 981 | 2017 |
| miR-33a/b contribute to the regulation of fatty acid metabolism and insulin signaling A Dávalos, L Goedeke, P Smibert, CM Ramírez, NP Warrier, U Andreo, ... Proceedings of the National Academy of Sciences 108 (22), 9232-9237, 2011 | 760 | 2011 |
| Identification of required host factors for SARS-CoV-2 infection in human cells Z Daniloski, TX Jordan, HH Wessels, DA Hoagland, S Kasela, M Legut, ... Cell 184 (1), 92-105. e16, 2021 | 572 | 2021 |
| Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells EP Mimitou, A Cheng, A Montalbano, S Hao, M Stoeckius, M Legut, ... Nature methods 16 (5), 409-412, 2019 | 482 | 2019 |
| Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells EP Mimitou, CA Lareau, KY Chen, AL Zorzetto-Fernandes, Y Hao, ... Nature biotechnology 39 (10), 1246-1258, 2021 | 379 | 2021 |
| Somatic mutations and cell identity linked by Genotyping of Transcriptomes AS Nam, KT Kim, R Chaligne, F Izzo, C Ang, J Taylor, RM Myers, ... Nature 571 (7765), 355-360, 2019 | 296 | 2019 |
| Global patterns of tissue-specific alternative polyadenylation in Drosophila P Smibert, P Miura, JO Westholm, S Shenker, G May, MO Duff, D Zhang, ... Cell reports 1 (3), 277-289, 2012 | 271 | 2012 |
| Homeostatic control of Argonaute stability by microRNA availability P Smibert, JS Yang, G Azzam, JL Liu, EC Lai Nature structural & molecular biology, 2013 | 179 | 2013 |
| Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens E Papalexi, EP Mimitou, AW Butler, S Foster, B Bracken, WM Mauck III, ... Nature genetics 53 (3), 322-331, 2021 | 162 | 2021 |
| A genome-scale screen for synthetic drivers of T cell proliferation M Legut, Z Gajic, M Guarino, Z Daniloski, JA Rahman, X Xue, C Lu, L Lu, ... Nature 603 (7902), 728-735, 2022 | 151 | 2022 |
| Direct detection of RNA modifications and structure using single-molecule nanopore sequencing W Stephenson, R Razaghi, S Busan, KM Weeks, W Timp, P Smibert Cell genomics 2 (2), 2022 | 143 | 2022 |
| Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens JA Morris, C Caragine, Z Daniloski, J Domingo, T Barry, L Lu, K Davis, ... Science 380 (6646), eadh7699, 2023 | 105 | 2023 |
| Methods and compositions for identifying or quantifying targets in a biological sample M Stoeckius, P Smibert, B Houck-Loomis US Patent App. 15/887,144, 2018 | 105 | 2018 |
| miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only F Bejarano, P Smibert, EC Lai Developmental biology 338 (1), 63-73, 2010 | 95 | 2010 |
| A personalized platform identifies trametinib plus zoledronate for a patient with KRAS-mutant metastatic colorectal cancer E Bangi, C Ang, P Smibert, AV Uzilov, AG Teague, Y Antipin, R Chen, ... Science Advances 5 (5), eaav6528, 2019 | 91 | 2019 |
| Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro B Zhang, A Srivastava, E Mimitou, T Stuart, I Raimondi, Y Hao, P Smibert, ... Nature biotechnology 40 (8), 1220-1230, 2022 | 83 | 2022 |
