| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 36527 | 2010 |
| Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011 | 7474 | 2011 |
| Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis RA Koeth, Z Wang, BS Levison, JA Buffa, E Org, BT Sheehy, EB Britt, X Fu, ... Nature medicine 19 (5), 576-585, 2013 | 4850 | 2013 |
| PyNAST: a flexible tool for aligning sequences to a template alignment JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ... Bioinformatics 26 (2), 266-267, 2010 | 3906 | 2010 |
| HIV-1 integration in the human genome favors active genes and local hotspots ARW Schröder, P Shinn, H Chen, C Berry, JR Ecker, F Bushman Cell 110 (4), 521-529, 2002 | 2542 | 2002 |
| Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1 S Hacein-Bey-Abina, A Garrigue, GP Wang, J Soulier, A Lim, E Morillon, ... The Journal of clinical investigation 118 (9), 3132-3142, 2008 | 2291 | 2008 |
| High-fat diet determines the composition of the murine gut microbiome independently of obesity MA Hildebrandt, C Hoffmann, SA Sherrill–Mix, SA Keilbaugh, M Hamady, ... Gastroenterology 137 (5), 1716-1724. e2, 2009 | 1860 | 2009 |
| Transfusion independence and HMGA2 activation after gene therapy of human β-thalassaemia M Cavazzana-Calvo, E Payen, O Negre, G Wang, K Hehir, F Fusil, ... Nature 467 (7313), 318-322, 2010 | 1679 | 2010 |
| Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011 | 1648 | 2011 |
| CRISPR-engineered T cells in patients with refractory cancer EA Stadtmauer, JA Fraietta, MM Davis, AD Cohen, KL Weber, E Lancaster, ... Science 367 (6481), eaba7365, 2020 | 1350 | 2020 |
| Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences RS Mitchell, BF Beitzel, ARW Schroder, P Shinn, H Chen, CC Berry, ... PLoS biology 2 (8), e234, 2004 | 1287 | 2004 |
| Topographical continuity of bacterial populations in the healthy human respiratory tract ES Charlson, K Bittinger, AR Haas, AS Fitzgerald, I Frank, A Yadav, ... American journal of respiratory and critical care medicine 184 (8), 957-963, 2011 | 1283 | 2011 |
| Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication R König, Y Zhou, D Elleder, TL Diamond, GMC Bonamy, JT Irelan, ... Cell 135 (1), 49-60, 2008 | 1210 | 2008 |
| Association between breast milk bacterial communities and establishment and development of the infant gut microbiome PS Pannaraj, F Li, C Cerini, JM Bender, S Yang, A Rollie, H Adisetiyo, ... JAMA pediatrics 171 (7), 647-654, 2017 | 1130 | 2017 |
| The human gut virome: inter-individual variation and dynamic response to diet S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ... Genome research 21 (10), 1616-1625, 2011 | 1098 | 2011 |
| Associating microbiome composition with environmental covariates using generalized UniFrac distances J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ... Bioinformatics 28 (16), 2106-2113, 2012 | 1032 | 2012 |
| Enterotypes in the landscape of gut microbial community composition PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ... Nature microbiology 3 (1), 8-16, 2018 | 1029 | 2018 |
| Human immunodeficiency virus type 1 preintegration complexes: studies of organization and composition MD Miller, CM Farnet, FD Bushman Journal of virology 71 (7), 5382-5390, 1997 | 1009 | 1997 |
| Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ... PloS one 8 (6), e66019, 2013 | 936 | 2013 |
| Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn’s disease JD Lewis, EZ Chen, RN Baldassano, AR Otley, AM Griffiths, D Lee, ... Cell host & microbe 18 (4), 489-500, 2015 | 906 | 2015 |
