An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 616 | 2017 |
Epigenetic control of rDNA loci in response to intracellular energy status A Murayama, K Ohmori, A Fujimura, H Minami, K Yasuzawa-Tanaka, ... Cell 133 (4), 627-639, 2008 | 458 | 2008 |
A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory A Murayama, K Sakura, M Nakama, K Yasuzawa‐Tanaka, E Fujita, ... The EMBO journal 25 (5), 1081-1092, 2006 | 219 | 2006 |
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 159 | 2020 |
Histone-like proteins are required for cell growth and constraint of supercoils in DNA Y Kayoko, H Naotaka, G Naoki, K Kyoko, I Fumio, K Yasunobu Gene 122 (1), 9-15, 1992 | 107 | 1992 |
Role of HU proteins in forming and constraining supercoils of chromosomal DNA inEscherichia coli H Tanaka, K Yasuzawa, K Kohno, N Goshima, Y Kano, T Saiki, F Imamoto Molecular and General Genetics MGG 248, 518-526, 1995 | 60 | 1995 |
Hepatic rRNA transcription regulates high-fat-diet-induced obesity S Oie, K Matsuzaki, W Yokoyama, S Tokunaga, T Waku, SI Han, ... Cell reports 7 (3), 807-820, 2014 | 36 | 2014 |
Propagation of phage Mu in IHF-dencient Escherichia coli in the absence of the H-NS histone-like protein K Yasunobu, Y Kayoko, T Hiromitu, I Fumio Gene 126 (1), 93-97, 1993 | 29 | 1993 |
Recounting the FANTOM CAGE-associated transcriptome EL Imada, DF Sanchez, L Collado-Torres, C Wilks, T Matam, ... Genome research 30 (7), 1073-1081, 2020 | 25 | 2020 |
Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types CW Yip, CC Hon, K Yasuzawa, DM Sivaraman, JA Ramilowski, ... Cell reports 41 (13), 2022 | 19 | 2022 |
Autoregulation of Transcription of the hupA Gene in Escherichia coli: Evidence for Steric Hindrance of the Functional Promoter Domains Induced by HU K Kohno, K Yasuzawa, M Hirose, Y Kano, N Goshima, H Tanaka, ... The Journal of Biochemistry 115 (6), 1113-1118, 1994 | 15 | 1994 |
Amino acid substitution in the C-terminal arm domain of HU-2 results in an enhanced affinity for DNA G Naoki, K Yasunobu, T Hiromitsu, T Hideyuki, K Kyoko, Y Kayoko, ... Gene 121 (1), 121-126, 1992 | 9 | 1992 |
Functional annotation of human long noncoding RNAs using chromatin conformation data S Agrawal, T Alam, M Koido, IV Kulakovskiy, J Severin, I Abugessaisa, ... bioRxiv, 2021 | 8 | 2021 |
Changes of DNA methylation in protooncogenes in the process of radiation-induced transformation of mouse m5S1M cells in vitro K Yasuzawa, S Kodama, M Kato, Y Uehara, R Tawa, S Hirose, MS Sasaki, ... Cancer letters 67 (2-3), 157-166, 1992 | 6 | 1992 |
Systematic identification of cis-interacting lncRNAs and their targets S Agrawal, IV Kulakovskiy, J Severin, M Koido, T Alam, I Abugessaisa, ... bioRxiv, 2021.01. 13.426305, 2021 | 4 | 2021 |
Consortium F, Hayashizaki Y, Carninci P, Forrest ARR, de Hoon MJL D de Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Astrom, ... An integrated expression atlas of miRNAs and their promoters in human and …, 2017 | 4 | 2017 |
Abundant capped RNAs are derived from mRNA cleavage at 3’UTR G-Quadruplexes N Haberman, H Digby, R Faraway, R Cheung, AM Jobbins, C Parr, ... bioRxiv, 2023.04. 27.538568, 2023 | 3 | 2023 |
The nucleolar protein NML regulates hepatic ATP levels during liver regeneration after partial hepatectomy A Mikogai, J Yanagisawa, K Yasuzawa-Tanaka, A Murayama Biochemical and biophysical research communications 390 (3), 591-596, 2009 | 2 | 2009 |
Update of the FANTOM web resource: enhancement for studying noncoding genomes T Nobusada, CW Yip, S Agrawal, J Severin, I Abugessaisa, A Hasegawa, ... Nucleic Acids Research 53 (D1), D419-D424, 2025 | 1 | 2025 |
Annotation of nuclear lncRNAs based on chromatin interactions S Agrawal, A Buyan, J Severin, M Koido, T Alam, I Abugessaisa, ... Plos one 19 (5), e0295971, 2024 | 1 | 2024 |