Các bài viết có thể truy cập công khai - Tsu-Pei ChiuTìm hiểu thêm
Có tại một số nơi: 20
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding
TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs
Bioinformatics 32 (8), 1211-1213, 2016
Các cơ quan ủy nhiệm: US National Science Foundation, US National Institutes of Health
DNA shape features improve transcription factor binding site predictions in vivo
A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman
Cell systems 3 (3), 278-286. e4, 2016
Các cơ quan ủy nhiệm: US National Science Foundation, US National Institutes of Health, Genome …
Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator
Z Deng, Q Wang, Z Liu, M Zhang, ACD Machado, TP Chiu, C Feng, ...
Nature communications 6 (1), 7642, 2015
Các cơ quan ủy nhiệm: US National Institutes of Health, National Natural Science Foundation of China
Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding
J Li, JM Sagendorf, TP Chiu, M Pasi, A Perez, R Rohs
Nucleic acids research 45 (22), 12877-12887, 2017
Các cơ quan ủy nhiệm: US National Institutes of Health, European Commission
Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding
S Rao, TP Chiu, JF Kribelbauer, RS Mann, HJ Bussemaker, R Rohs
Epigenetics & chromatin 11, 1-11, 2018
Các cơ quan ủy nhiệm: US National Institutes of Health, Howard Hughes Medical Institute
Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein–DNA binding
TP Chiu, S Rao, RS Mann, B Honig, R Rohs
Nucleic acids research 45 (21), 12565-12576, 2017
Các cơ quan ủy nhiệm: US National Institutes of Health
GBshape: a genome browser database for DNA shape annotations
TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ...
Nucleic acids research 43 (D1), D103-D109, 2015
Các cơ quan ủy nhiệm: US National Institutes of Health
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites
TP Chiu, B Xin, N Markarian, Y Wang, R Rohs
Nucleic acids research 48 (D1), D246-D255, 2020
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria
X Wu, B Cao, P Aquino, TP Chiu, C Chen, S Jiang, Z Deng, S Chen, ...
Proceedings of the National Academy of Sciences 117 (25), 14322-14330, 2020
Các cơ quan ủy nhiệm: US National Science Foundation, US National Institutes of Health, National …
Macrophages activated by hepatitis B virus have distinct metabolic profiles and suppress the virus via IL-1β to downregulate PPARα and FOXO3
Y Li, Y Zhu, S Feng, Y Ishida, TP Chiu, T Saito, S Wang, DK Ann, JJ Ou
Cell reports 38 (4), 2022
Các cơ quan ủy nhiệm: US National Institutes of Health
Predicting DNA structure using a deep learning method
J Li, TP Chiu, R Rohs
Nature communications 15 (1), 1243, 2024
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations
RN Azad, D Zafiropoulos, D Ober, Y Jiang, TP Chiu, JM Sagendorf, ...
Nucleic acids research 46 (5), 2636-2647, 2018
Các cơ quan ủy nhiệm: US National Institutes of Health
Physicochemical models of protein–DNA binding with standard and modified base pairs
TP Chiu, S Rao, R Rohs
Proceedings of the National Academy of Sciences 120 (4), e2205796120, 2023
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Geometric deep learning of protein–DNA binding specificity
R Mitra, J Li, JM Sagendorf, Y Jiang, AS Cohen, TP Chiu, CJ Glasscock, ...
Nature Methods 21 (9), 1674-1683, 2024
Các cơ quan ủy nhiệm: Human Frontier Science Program
It is in the flanks: Conformational flexibility of transcription factor binding sites
TP Chiu, J Li, Y Jiang, R Rohs
Biophysical Journal 121 (20), 3765-3767, 2022
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Probing the role of the protonation state of a minor groove-linker histidine in Exd-Hox–DNA binding
Y Jiang, TP Chiu, R Mitra, R Rohs
Biophysical Journal 123 (2), 248-259, 2024
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Deep DNAshape: Predicting DNA shape considering extended flanking regions using a deep learning method
J Li, TP Chiu, R Rohs
bioRxiv, 2023.10. 22.563383, 2023
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics
BH Cooper, TP Chiu, R Rohs
Bioinformatics 38 (22), 5121-5123, 2022
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
DNAdesign: feature-aware in silico design of synthetic DNA through mutation
Y Wang, J Li, TP Chiu, N Gompel, R Rohs
Bioinformatics 41 (2), btaf052, 2025
Các cơ quan ủy nhiệm: Human Frontier Science Program
DeepPBS: Geometric deep learning for interpretable prediction of protein–DNA binding specificity
R Mitra, J Li, JM Sagendorf, Y Jiang, TP Chiu, R Rohs
bioRxiv, 2023.12. 15.571942, 2023
Các cơ quan ủy nhiệm: US National Institutes of Health, Human Frontier Science Program
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