Theo dõi
Jason Ernst
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 2012
175992012
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
6500*2015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
33812011
ChromHMM: automating chromatin-state discovery and characterization
J Ernst, M Kellis
Nature Methods 9 (3), 215-216, 2012
26362012
STEM: a tool for the analysis of short time series gene expression data
J Ernst, Z Bar-Joseph
BMC bioinformatics 7, 1-11, 2006
16012006
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
14992011
Discovery and characterization of chromatin states for systematic annotation of the human genome
J Ernst, M Kellis
Nature Biotechnology 28, 817-825, 2010
13152010
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
13002011
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
11132010
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ...
Nature 471 (7339), 480-485, 2011
10032011
Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci
PL De Jager, G Srivastava, K Lunnon, J Burgess, LC Schalkwyk, L Yu, ...
Nature neuroscience 17 (9), 1156-1163, 2014
10022014
Chromatin-state discovery and genome annotation with ChromHMM
J Ernst, M Kellis
Nature protocols 12 (12), 2478-2492, 2017
8012017
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research, gks1284, 2013
6332013
Chromosome conformation elucidates regulatory relationships in developing human brain
H Won, L de La Torre-Ubieta, JL Stein, NN Parikshak, J Huang, ...
Nature 538 (7626), 523-527, 2016
6172016
Clustering short time series gene expression data
J Ernst, GJ Nau, Z Bar-Joseph
Bioinformatics 21 (suppl_1), i159-i168, 2005
5852005
Cooperative binding of transcription factors orchestrates reprogramming
C Chronis, P Fiziev, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath
Cell 168 (3), 442-459. e20, 2017
5522017
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabási, ...
Proceedings of the National Academy of Sciences 104 (31), 12663-12668, 2007
4382007
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
J Ernst, M Kellis
Nature biotechnology 33 (4), 364-376, 2015
4212015
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ...
Cell 147 (7), 1628-1639, 2011
4032011
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
P Kheradpour, J Ernst, A Melnikov, P Rogov, L Wang, X Zhang, J Alston, ...
Genome research 23 (5), 800-811, 2013
3642013
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Bài viết 1–20