| Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies DM Gohl, P Vangay, J Garbe, A MacLean, A Hauge, A Becker, TJ Gould, ... Nature biotechnology 34 (9), 942-949, 2016 | 778 | 2016 |
| US immigration westernizes the human gut microbiome P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ... Cell 175 (4), 962-972. e10, 2018 | 718 | 2018 |
| Antibiotics, pediatric dysbiosis, and disease P Vangay, T Ward, JS Gerber, D Knights Cell host & microbe 17 (5), 553-564, 2015 | 641 | 2015 |
| Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell host & microbe 25 (6), 789-802. e5, 2019 | 600 | 2019 |
| Captivity humanizes the primate microbiome JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ... Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016 | 516 | 2016 |
| Chemotherapy‐driven dysbiosis in the intestinal microbiome E Montassier, T Gastinne, P Vangay, GA Al‐Ghalith, ... Alimentary pharmacology & therapeutics 42 (5), 515-528, 2015 | 488 | 2015 |
| Complex host genetics influence the microbiome in inflammatory bowel disease D Knights, MS Silverberg, RK Weersma, D Gevers, G Dijkstra, H Huang, ... Genome medicine 6, 1-11, 2014 | 464 | 2014 |
| Stable engraftment of Bifidobacterium longum AH1206 in the human gut depends on individualized features of the resident microbiome MX Maldonado-Gómez, I Martínez, F Bottacini, A O’Callaghan, M Ventura, ... Cell host & microbe 20 (4), 515-526, 2016 | 460 | 2016 |
| Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice AE Livanos, TU Greiner, P Vangay, W Pathmasiri, D Stewart, S McRitchie, ... Nature microbiology 1 (11), 1-13, 2016 | 376 | 2016 |
| Substituting whole grains for refined grains in a 6-wk randomized trial has a modest effect on gut microbiota and immune and inflammatory markers of healthy adults SM Vanegas, M Meydani, JB Barnett, B Goldin, A Kane, H Rasmussen, ... The American journal of clinical nutrition 105 (3), 635-650, 2017 | 299 | 2017 |
| Substituting whole grains for refined grains in a 6-wk randomized trial favorably affects energy-balance metrics in healthy men and postmenopausal women JP Karl, M Meydani, JB Barnett, SM Vanegas, B Goldin, A Kane, ... The American journal of clinical nutrition 105 (3), 589-599, 2017 | 114 | 2017 |
| Fecal concentrations of bacterially derived vitamin K forms are associated with gut microbiota composition but not plasma or fecal cytokine concentrations in healthy adults JP Karl, M Meydani, JB Barnett, SM Vanegas, K Barger, X Fu, B Goldin, ... The American journal of clinical nutrition 106 (4), 1052-1061, 2017 | 109 | 2017 |
| Personalized Microbiome Class Students; et al. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 2019 | 86 | 2019 |
| Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks P Vangay, BM Hillmann, D Knights Gigascience 8 (5), giz042, 2019 | 83 | 2019 |
| Associations between nutrition, gut microbiome, and health in a novel nonhuman primate model JB Clayton, GA Al-Ghalith, HT Long, BV Tuan, F Cabana, H Huang, ... Scientific reports 8 (1), 11159, 2018 | 80 | 2018 |
| Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes P Vangay, EB Fugett, QI Sun, M Wiedmann Journal of food protection 76 (2), 283-294, 2013 | 61 | 2013 |
| The national microbiome data collaborative: enabling microbiome science EM Wood-Charlson, Anubhav, D Auberry, H Blanco, MI Borkum, ... Nature Reviews Microbiology 18 (6), 313-314, 2020 | 55 | 2020 |
| Multi-omics analysis of inflammatory bowel disease H Huang, P Vangay, CE McKinlay, D Knights Immunology letters 162 (2), 62-68, 2014 | 50 | 2014 |
| Microbiome metadata standards: report of the national microbiome data collaborative’s workshop and follow-on activities P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ... Msystems 6 (1), 10.1128/msystems. 01194-20, 2021 | 47 | 2021 |
| The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource EA Eloe-Fadrosh, F Ahmed, M Babinski, J Baumes, M Borkum, L Bramer, ... Nucleic acids research 50 (D1), D828-D836, 2022 | 46 | 2022 |