Các bài viết có thể truy cập công khai - David C. RichardsonTìm hiểu thêm
Không có ở bất kỳ nơi nào: 2
The Zen of Model Anomalies–Correct Most of Them. Treasure the Meaningful Valid Few. Live Serenely with the Rest!
JS Richardson, DC Richardson
Advancing Methods for Biomolecular Crystallography, 1-10, 2013
Các cơ quan ủy nhiệm: US National Institutes of Health
KiNG and kinemages
VB Chen, JS Richardson, DC Richardson
International Union of Crystallography, 2012
Các cơ quan ủy nhiệm: US National Institutes of Health
Có tại một số nơi: 42
PHENIX: a comprehensive Python-based system for macromolecular structure solution
PD Adams, PV Afonine, G Bunkóczi, VB Chen, IW Davis, N Echols, ...
Biological crystallography 66 (2), 213-221, 2010
Các cơ quan ủy nhiệm: US National Institutes of Health
MolProbity: all-atom structure validation for macromolecular crystallography
VB Chen, WB Arendall, JJ Headd, DA Keedy, RM Immormino, GJ Kapral, ...
Biological crystallography 66 (1), 12-21, 2010
Các cơ quan ủy nhiệm: US National Institutes of Health
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
D Liebschner, PV Afonine, ML Baker, G Bunkóczi, VB Chen, TI Croll, ...
Biological Crystallography 75 (10), 861-877, 2019
Các cơ quan ủy nhiệm: US Department of Energy, US National Institutes of Health, Wellcome Trust …
MolProbity: more and better reference data for improved all‐atom structure validation
CJ Williams, JJ Headd, NW Moriarty, MG Prisant, LL Videau, LN Deis, ...
Protein Science 27 (1), 293-315, 2018
Các cơ quan ủy nhiệm: US National Institutes of Health
Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters
BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ...
Cell 167 (5), 1369-1384. e19, 2016
Các cơ quan ủy nhiệm: European Molecular Biology Laboratory, UK Biotechnology and Biological …
The Phenix software for automated determination of macromolecular structures
PD Adams, PV Afonine, G Bunkóczi, VB Chen, N Echols, JJ Headd, ...
Methods 55 (1), 94-106, 2011
Các cơ quan ủy nhiệm: US National Institutes of Health
Alternate states of proteins revealed by detailed energy landscape mapping
MD Tyka, DA Keedy, I André, F DiMaio, Y Song, DC Richardson, ...
Journal of molecular biology 405 (2), 607-618, 2011
Các cơ quan ủy nhiệm: US National Institutes of Health, Howard Hughes Medical Institute
Use of knowledge-based restraints in phenix. refine to improve macromolecular refinement at low resolution
JJ Headd, N Echols, PV Afonine, RW Grosse-Kunstleve, VB Chen, ...
Biological Crystallography 68 (4), 381-390, 2012
Các cơ quan ủy nhiệm: US National Institutes of Health
KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program
VB Chen, IW Davis, DC Richardson
Protein science 18 (11), 2403-2409, 2009
Các cơ quan ủy nhiệm: US National Institutes of Health, Howard Hughes Medical Institute
Graphical tools for macromolecular crystallography in PHENIX
N Echols, RW Grosse-Kunstleve, PV Afonine, G Bunkóczi, VB Chen, ...
Applied Crystallography 45 (3), 581-586, 2012
Các cơ quan ủy nhiệm: US National Institutes of Health
OSPREY: protein design with ensembles, flexibility, and provable algorithms
P Gainza, KE Roberts, I Georgiev, RH Lilien, DA Keedy, CY Chen, F Reza, ...
Methods in enzymology 523, 87-107, 2013
Các cơ quan ủy nhiệm: US National Institutes of Health
New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink “waters,” and NGL Viewer to recapture online 3D graphics
MG Prisant, CJ Williams, VB Chen, JS Richardson, DC Richardson
Protein Science 29 (1), 315-329, 2020
Các cơ quan ủy nhiệm: US National Institutes of Health
Molprobity's ultimate rotamer‐library distributions for model validation
BJ Hintze, SM Lewis, JS Richardson, DC Richardson
Proteins: Structure, Function, and Bioinformatics 84 (9), 1177-1189, 2016
Các cơ quan ủy nhiệm: US National Science Foundation, US National Institutes of Health
Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems
PD Adams, D Baker, AT Brunger, R Das, F DiMaio, RJ Read, ...
Annual review of biophysics 42 (1), 265-287, 2013
Các cơ quan ủy nhiệm: US National Institutes of Health, Wellcome Trust
phenix. model_vs_data: A high-level tool for the calculation of crystallographic model and data statistics
PV Afonine, RW Grosse-Kunstleve, VB Chen, JJ Headd, NW Moriarty, ...
Applied Crystallography 43 (4), 669-676, 2010
Các cơ quan ủy nhiệm: US National Institutes of Health
Algorithm for backrub motions in protein design
I Georgiev, D Keedy, JS Richardson, DC Richardson, BR Donald
Bioinformatics 24 (13), i196-i204, 2008
Các cơ quan ủy nhiệm: US National Institutes of Health
The other 90% of the protein: Assessment beyond the Cαs for CASP8 template‐based and high‐accuracy models
DA Keedy, CJ Williams, JJ Headd, WB Arendall III, VB Chen, GJ Kapral, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 29-49, 2009
Các cơ quan ủy nhiệm: US National Institutes of Health
Multiscale conformational heterogeneity in staphylococcal protein a: possible determinant of functional plasticity
LN Deis, CW Pemble, Y Qi, A Hagarman, DC Richardson, JS Richardson, ...
Structure 22 (10), 1467-1477, 2014
Các cơ quan ủy nhiệm: US Department of Energy, US National Institutes of Health
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