Theo dõi
Kaiyuan Zhu
Kaiyuan Zhu
UC San Diego
Email được xác minh tại ucsd.edu
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
Sketching algorithms for genomic data analysis and querying in a secure enclave
C Kockan, K Zhu, N Dokmai, N Karpov, MO Kulekci, DP Woodruff, ...
Nature methods 17 (3), 295-301, 2020
672020
Privacy-preserving genotype imputation in a trusted execution environment
N Dokmai, C Kockan, K Zhu, XF Wang, SC Sahinalp, H Cho
Cell systems 12 (10), 983-993. e7, 2021
402021
Optimal compressed representation of high throughput sequence data via light assembly
AA Ginart, J Hui, K Zhu, I Numanagić, TA Courtade, SC Sahinalp, DN Tse
Nature communications 9 (1), 566, 2018
242018
Strain level microbial detection and quantification with applications to single cell metagenomics
K Zhu, AA Schäffer, W Robinson, J Xu, E Ruppin, AF Ergun, Y Ye, ...
Nature Communications 13 (1), 6430, 2022
142022
Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes
W Robinson, JK Stone, F Schischlik, B Gasmi, MC Kelly, C Seibert, ...
Science Advances 10 (27), adj7402, 2024
11*2024
Combinatorial detection of conserved alteration patterns for identifying cancer subnetworks
E Hodzic, R Shrestha, K Zhu, K Cheng, CC Collins, S Cenk Sahinalp
GigaScience 8 (4), giz024, 2019
92019
A graph-based approach for proteoform identification and quantification using top-down homogeneous multiplexed tandem mass spectra
K Zhu, X Liu
BMC bioinformatics 19, 77-84, 2018
82018
CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
K Zhu, MG Jones, J Luebeck, X Bu, H Yi, KL Hung, ITL Wong, S Zhang, ...
Genome Research 34 (9), 1344-1354, 2024
52024
Genomic Data Compression.
K Zhu, I Numanagic, SC Sahinalp
Encyclopedia of Big Data Technologies, 2019
22019
Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity
S Raeisi Dehkordi, ITL Wong, J Ni, J Luebeck, K Zhu, G Prasad, ...
Nature Communications 16 (1), 1497, 2025
1*2025
TX-Phase: Secure Phasing of Private Genomes in a Trusted Execution Environment
N Dokmai, K Zhu, SC Sahinalp, H Cho
bioRxiv, 2024.09. 16.613301, 2024
12024
Learning-Augmented Sketching Offers Improved Performance for Privacy Preserving and Secure GWAS
J Xu, K Zhu, J Cai, C Kockan, N Dokmai, H Cho, DP Woodruff, ...
iScience, 2025
2025
Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D
B Chowdhury, K Zhu, C Li, J Luebeck, OS Chapman, K Kraft, S Zhang, ...
bioRxiv, 2025.02. 01.636064, 2025
2025
Inhibition of novel human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer
J Califano, T Nakagawa, J Luebeck, K Zhu, J Lange, R Sasik, C Phillips, ...
2024
Approximating Max NAE-k-SAT by anonymous local search
A Xian, K Zhu, D Zhu, L Pu, H Liu
Theoretical Computer Science 657, 54-63, 2017
2017
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