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The Genome of the Sea Urchin Strongylocentrotus purpuratus E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, ... Science 314 (5801), 941-952, 2006 | 1286 | 2006 |
The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome JV Goldstone, A Hamdoun, BJ Cole, M Howard-Ashby, DW Nebert, ... Developmental biology 300 (1), 366-384, 2006 | 310 | 2006 |
A hybrid approach for the automated finishing of bacterial genomes A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ... Nature biotechnology 30 (7), 701-707, 2012 | 230 | 2012 |
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ... Developmental biology 300 (1), 90-107, 2006 | 162 | 2006 |
Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ... Developmental biology 300 (1), 74-89, 2006 | 152 | 2006 |
The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development SC Materna, M Howard-Ashby, RF Gray, EH Davidson Developmental biology 300 (1), 108-120, 2006 | 105 | 2006 |
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution M Howard-Ashby, SC Materna, CT Brown, Q Tu, P Oliveri, RA Cameron, ... Developmental biology 300 (1), 27-34, 2006 | 62 | 2006 |
Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data JL Gehrig, DM Portik, MD Driscoll, E Jackson, S Chakraborty, D Gratalo, ... Microbial Genomics 8 (3), 000794, 2022 | 55 | 2022 |
The complete methylome of Helicobacter pylori UM032 WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ... BMC genomics 16, 1-9, 2015 | 50 | 2015 |
Identification of differentially expressed splice variants by the proteogenomic pipeline splicify MA Komor, TV Pham, AC Hiemstra, SR Piersma, AS Bolijn, T Schelfhorst, ... Molecular & Cellular Proteomics 16 (10), 1850-1863, 2017 | 37 | 2017 |
Comparative genomics reveals the diversity of restriction-modification systems and DNA methylation sites in Listeria monocytogenes P Chen, HC den Bakker, J Korlach, N Kong, DB Storey, EE Paxinos, ... Applied and environmental microbiology 83 (3), e02091-16, 2017 | 36 | 2017 |
Draft genome sequences of Burkholderia cenocepacia ET12 lineage strains K56-2 and BC7 JJ Varga, L Losada, AM Zelazny, M Kim, J McCorrison, L Brinkac, ... Genome Announcements 1 (5), 10.1128/genomea. 00841-13, 2013 | 34 | 2013 |
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Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia L Tian, Y Shao, S Nance, J Dang, B Xu, X Ma, Y Li, B Ju, L Dong, ... Nature communications 10 (1), 2789, 2019 | 24 | 2019 |
Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity EG Wilbanks, H Doré, MH Ashby, C Heiner, RJ Roberts, JA Eisen The ISME Journal 16 (8), 1921-1931, 2022 | 20 | 2022 |
The complete methylome of WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ... Helicobacter pylori, 2015 | 17 | 2015 |
Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives Y Khosravi, V Rehvathy, WY Wee, S Wang, P Baybayan, S Singh, ... Gut pathogens 5, 1-6, 2013 | 17 | 2013 |
Multiple genome sequences of Helicobacter pylori strains of diverse disease and antibiotic resistance backgrounds from Malaysia V Rehvathy, MH Tan, SP Gunaletchumy, X Teh, S Wang, P Baybayan, ... Genome announcements 1 (5), 10.1128/genomea. 00687-13, 2013 | 16 | 2013 |
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities CC Saak, EC Pierce, CB Dinh, D Portik, R Hall, M Ashby, RJ Dutton Msystems 8 (1), e00701-22, 2023 | 11 | 2023 |