| Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum C Gieger, L Geistlinger, E Altmaier, M Hrabé de Angelis, F Kronenberg, ... PLoS genetics 4 (11), e1000282, 2008 | 850 | 2008 |
| Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature methods 17 (2), 137-145, 2020 | 826 | 2020 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature medicine 27 (2), 321-332, 2021 | 786 | 2021 |
| Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 298 | 2021 |
| Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma GM Chen, L Kannan, L Geistlinger, V Kofia, Z Safikhani, D Gendoo, ... Clinical Cancer Research 24 (20), 5037-5047, 2018 | 139 | 2018 |
| Toward a gold standard for benchmarking gene set enrichment analysis L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ... Briefings in bioinformatics 22 (1), 545-556, 2021 | 127 | 2021 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 115 | 2022 |
| Factors influencing the efficiency of generating genetically engineered pigs by nuclear transfer: multi-factorial analysis of a large data set M Kurome, L Geistlinger, B Kessler, V Zakhartchenko, N Klymiuk, ... BMC biotechnology 13, 1-13, 2013 | 111 | 2013 |
| Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma L Geistlinger, S Oh, M Ramos, L Schiffer, RS LaRue, CM Henzler, ... Cancer research 80 (20), 4335-4345, 2020 | 91 | 2020 |
| Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set-& network-based enrichment analysis L Geistlinger, G Csaba, R Zimmer BMC bioinformatics 17, 1-11, 2016 | 90 | 2016 |
| From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems L Geistlinger, G Csaba, R Küffner, N Mulder, R Zimmer Bioinformatics 27 (13), i366-i373, 2011 | 87 | 2011 |
| Multiomic integration of public oncology databases in bioconductor M Ramos, L Geistlinger, S Oh, L Schiffer, R Azhar, H Kodali, I de Bruijn, ... JCO clinical cancer informatics 1, 958-971, 2020 | 85 | 2020 |
| Genome-wide detection of CNVs and their association with meat tenderness in Nelore cattle VH Silva, LCA Regitano, L Geistlinger, F Pértille, PF Giachetto, ... PloS one 11 (6), e0157711, 2016 | 60 | 2016 |
| Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits ASM Cesar, LCA Regitano, JM Reecy, MD Poleti, PSN Oliveira, ... BMC genomics 19, 1-20, 2018 | 52 | 2018 |
| Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study F Beghini, A Renson, CP Zolnik, L Geistlinger, M Usyk, TU Moody, ... Annals of epidemiology 34, 18-25. e3, 2019 | 39 | 2019 |
| HMP16SData: efficient access to the Human Microbiome Project through Bioconductor L Schiffer, R Azhar, L Shepherd, M Ramos, L Geistlinger, C Huttenhower, ... Am J Epidemiol 188 (6), 1023-1026, 2018 | 35 | 2018 |
| Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling P Cadinu, KN Sivanathan, A Misra, RJ Xu, D Mangani, E Yang, JM Rone, ... Cell 187 (8), 2010-2028. e30, 2024 | 32 | 2024 |
| Detection of co-expressed pathway modules associated with mineral concentration and meat quality in nelore cattle WJS Diniz, G Mazzoni, LL Coutinho, P Banerjee, L Geistlinger, ... Frontiers in genetics 10, 210, 2019 | 31 | 2019 |
| A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae L Geistlinger, G Csaba, S Dirmeier, R Küffner, R Zimmer Nucleic acids research 41 (18), 8452-8463, 2013 | 31 | 2013 |
| Reliable analysis of clinical tumor-only whole-exome sequencing data S Oh, L Geistlinger, M Ramos, M Morgan, L Waldron, M Riester JCO Clinical Cancer Informatics 4, 321-335, 2020 | 30 | 2020 |