Theo dõi
Salvatore Cosentino
Salvatore Cosentino
Research Associate, Graduate School of Frontier Sciences, The University of Tokyo
Email được xác minh tại k.u-tokyo.ac.jp - Trang chủ
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
Identification of acquired antimicrobial resistance genes
E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ...
Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012
51502012
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
23752012
PathogenFinder-distinguishing friend from foe using bacterial whole genome sequence data
S Cosentino, M Voldby Larsen, F Møller Aarestrup, O Lund
PloS one 8 (10), e77302, 2013
5632013
Benchmarking of methods for genomic taxonomy
MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ...
Journal of clinical microbiology 52 (5), 1529-1539, 2014
3802014
SonicParanoid: fast, accurate and easy orthology inference
S Cosentino, W Iwasaki
Bioinformatics 35 (1), 149-151, 2019
1252019
The Quest for Orthologs orthology benchmark service in 2022
Y Nevers, TEM Jones, D Jyothi, B Yates, M Ferret, L Portell-Silva, L Codo, ...
Nucleic Acids Research 50 (W1), W623-W632, 2022
492022
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ...
Nucleic acids research 48 (W1), W538-W545, 2020
482020
Ten Years of Collaborative Progress in the Quest for Orthologs
T Linard, Benjamin and Ebersberger, Ingo and McGlynn, Shawn E and Glover ...
Molecular Biology and Evolution 38 (8), 3033–3045, 2021
362021
Correction: PathogenFinder-distinguishing friend from foe using bacterial whole genome sequence data
S Cosentino, MV Larsen, FM Aarestrup, O Lund
PLoS One 8 (12), 10.1371/annotation/b84e1af7-c127-45c3-be22-76abd977600f, 2013
132013
SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models
S Cosentino, S Sriswasdi, W Iwasaki
Genome Biology 25 (1), 195, 2024
112024
The CGE tool box
MV Larsen, KG Joensen, E Zankari, J Ahrenfeldt, O Lukjancenko, ...
Applied Genomics of Foodborne Pathogens, 65-90, 2017
112017
Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years
M Anda, S Yamanouchi, S Cosentino, M Sakamoto, M Ohkuma, ...
Nature Communications 14 (1), 7232, 2023
72023
Quest for Orthologs in the Era of Biodiversity Genomics
F Langschied, N Bordin, S Cosentino, D Fuentes-Palacios, N Glover, ...
Genome biology and evolution 16 (10), evae224, 2024
32024
SonicParanoid: extremely fast, accurate, and easy orthology inference
S Cosentino, W Iwasaki
Bioinformatics. https://doi. org/10.1093/bioinformatics/bty631, 2018
12018
New developments for the Quest for Orthologs benchmark service
A Altenhoff, Y Nevers, V Tran, D Jyothi, M Martin, S Cosentino, S Majidian, ...
NAR genomics and bioinformatics 6 (4), lqae167, 2024
2024
SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models
S Cosentino, W Iwasaki
bioRxiv, 2023.05. 14.540736, 2023
2023
The Good, the Bad and the Deadly: Characterisation of bacteria through DNA analysis
S Cosentino, MV Larsen, O Lund
Technical University of DenmarkDanmarks Tekniske Universitet, Department of …, 2014
2014
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