| Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017 | 1017 | 2017 |
| Resolving the complexity of the human genome using single-molecule sequencing MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ... Nature 517 (7536), 608-611, 2015 | 873 | 2015 |
| Discovery and genotyping of structural variation from long-read haploid genome sequence data J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ... Genome research 27 (5), 677-685, 2017 | 410 | 2017 |
| Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing TA Clark, IA Murray, RD Morgan, AO Kislyuk, KE Spittle, M Boitano, ... Nucleic acids research 40 (4), e29-e29, 2012 | 358 | 2012 |
| Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae S Conlan, PJ Thomas, C Deming, M Park, AF Lau, JP Dekker, ES Snitkin, ... Science translational medicine 6 (254), 254ra126-254ra126, 2014 | 355 | 2014 |
| The methylomes of six bacteria IA Murray, TA Clark, RD Morgan, M Boitano, BP Anton, K Luong, ... Nucleic acids research 40 (22), 11450-11462, 2012 | 318 | 2012 |
| A random six-phase switch regulates pneumococcal virulence via global epigenetic changes AS Manso, MH Chai, JM Atack, L Furi, M De Ste Croix, R Haigh, ... Nature communications 5 (1), 5055, 2014 | 238 | 2014 |
| Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation TA Clark, X Lu, K Luong, Q Dai, M Boitano, SW Turner, C He, J Korlach BMC biology 11, 1-10, 2013 | 163 | 2013 |
| Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding S Vij, H Kuhl, IS Kuznetsova, A Komissarov, AA Yurchenko, ... PLoS genetics 12 (4), e1005954, 2016 | 156 | 2016 |
| A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae JM Atack, YN Srikhanta, KL Fox, JA Jurcisek, KL Brockman, TA Clark, ... Nature communications 6 (1), 7828, 2015 | 120 | 2015 |
| Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences B Cao, C Chen, MS DeMott, Q Cheng, TA Clark, X Xiong, X Zheng, ... Nature communications 5 (1), 3951, 2014 | 110 | 2014 |
| SMRT-Cappable-seq reveals complex operon variants in bacteria B Yan, M Boitano, TA Clark, L Ettwiller Nature communications 9 (1), 3676, 2018 | 107 | 2018 |
| Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle JB Kozdon, MD Melfi, K Luong, TA Clark, M Boitano, S Wang, B Zhou, ... Proceedings of the National Academy of Sciences 110 (48), E4658-E4667, 2013 | 106 | 2013 |
| Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing Y Doi, TH Hazen, M Boitano, YC Tsai, TA Clark, J Korlach, DA Rasko Antimicrobial agents and chemotherapy 58 (10), 5947-5953, 2014 | 76 | 2014 |
| ModM DNA methyltransferase methylome analysis reveals a potential role for Moraxella catarrhalis phasevarions in otitis media LV Blakeway, PM Power, FEC Jen, SR Worboys, M Boitano, TA Clark, ... The FASEB Journal 28 (12), 5197-5207, 2014 | 73 | 2014 |
| Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria meningitidis KL Seib, FEC Jen, A Tan, AL Scott, R Kumar, PM Power, LT Chen, HJ Wu, ... Nucleic acids research 43 (8), 4150-4162, 2015 | 61 | 2015 |
| Genome-wide methylation patterns in Salmonella enterica subsp. enterica serovars C Pirone-Davies, M Hoffmann, RJ Roberts, T Muruvanda, RE Timme, ... PloS one 10 (4), e0123639, 2015 | 47 | 2015 |
| A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data KT Mou, UK Muppirala, AJ Severin, TA Clark, M Boitano, PJ Plummer Frontiers in microbiology 5, 782, 2015 | 34 | 2015 |
| Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing PA Genest, L Baugh, A Taipale, W Zhao, S Jan, HGAM van Luenen, ... Nucleic acids research 43 (4), 2102-2115, 2015 | 33 | 2015 |
| Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori YN Srikhanta, RJ Gorrell, PM Power, K Tsyganov, M Boitano, TA Clark, ... Scientific Reports 7 (1), 16140, 2017 | 31 | 2017 |