| Accurate assembly of transcripts through phase-preserving graph decomposition M Shao, C Kingsford Nature biotechnology 35 (12), 1167-1169, 2017 | 214 | 2017 |
| An exact algorithm to compute the double-cut-and-join distance for genomes with duplicate genes M Shao, Y Lin, BME Moret Journal of Computational Biology 22 (5), 425-435, 2015 | 95 | 2015 |
| Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion M Shao, Y Lin BMC bioinformatics 13 (Suppl 19), S13, 2012 | 49 | 2012 |
| Theory and a heuristic for the minimum path flow decomposition problem M Shao, C Kingsford IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017 | 35 | 2017 |
| SQUID: transcriptomic structural variation detection from RNA-seq C Ma, M Shao, C Kingsford Genome biology 19 (1), 52, 2018 | 31 | 2018 |
| Comparing genomes with rearrangements and segmental duplications M Shao, BME Moret Bioinformatics 31 (12), i329-i338, 2015 | 23 | 2015 |
| Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads LH Tung, M Shao, C Kingsford Genome biology 20, 1-18, 2019 | 20 | 2019 |
| Accurate assembly of multi-end RNA-seq data with Scallop2 Q Zhang, Q Shi, M Shao Nature computational science 2 (3), 148-152, 2022 | 18 | 2022 |
| Sorting genomes with rearrangements and segmental duplications through trajectory graphs M Shao, Y Lin, B Moret BMC Bioinformatics 14 (Suppl 15), S9, 2013 | 18 | 2013 |
| DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields M Shao, J Ma, S Wang Bioinformatics 33 (14), i267-i273, 2017 | 16 | 2017 |
| A fast and exact algorithm for the exemplar breakpoint distance M Shao, BME Moret Journal of Computational Biology 23 (5), 337-346, 2016 | 14 | 2016 |
| On computing breakpoint distances for genomes with duplicate genes M Shao, B Moret Journal of Computational Biology 24 (6), 571-580, 2017 | 12 | 2017 |
| Incorporating Ab Initio energy into threading approaches for protein structure prediction M Shao, S Wang, C Wang, X Yuan, SC Li, W Zheng, D Bu BMC bioinformatics 12 (Suppl 1), S54, 2011 | 12 | 2011 |
| Scallop2 enables accurate assembly of multiple-end RNA-seq data Q Zhang, Q Shi, M Shao BioRxiv, 2021.09. 03.458862, 2021 | 7 | 2021 |
| A maximum-likelihood approach for building cell-type trees by lifting NU Nair, L Hunter, M Shao, P Grnarova, Y Lin, P Bucher, BM E. Moret BMC genomics 17, 33-40, 2016 | 5 | 2016 |
| Seeding with minimized subsequence X Li, Q Shi, K Chen, M Shao Bioinformatics 39 (Supplement_1), i232-i241, 2023 | 4 | 2023 |
| Accurate assembly of circular RNAs with TERRACE T Zahin, Q Shi, XC Zang, M Shao Genome research 34 (9), 1365-1370, 2024 | 3 | 2024 |
| On de novo Bridging Paired-end RNA-seq Data X Li, M Shao Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023 | 3 | 2023 |
| Context-aware seeds for read mapping H Xin, M Shao, C Kingsford Algorithms for Molecular Biology 15, 1-12, 2020 | 3 | 2020 |
| Efficient seeding for error-prone sequences with SubseqHash2 X Li, K Chen, M Shao bioRxiv, 2024 | 2 | 2024 |
Bernard M.E. MoretISCB Fellow, Professor emeritus, Computer & Communication Sciences, EPFLepfl.ch üzerinde doğrulanmış e-posta adresine sahip