Martini 3: a general purpose force field for coarse-grained molecular dynamics PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ... Nature methods 18 (4), 382-388, 2021 | 949 | 2021 |
Molecular lipidomics of exosomes released by PC-3 prostate cancer cells A Llorente, T Skotland, T Sylvänne, D Kauhanen, T Róg, A Orłowski, ... Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2013 | 854 | 2013 |
Ordering effects of cholesterol and its analogues T Róg, M Pasenkiewicz-Gierula, I Vattulainen, M Karttunen Biochimica et Biophysica Acta (BBA)-Biomembranes 1788 (1), 97-121, 2009 | 721 | 2009 |
Antidepressant drugs act by directly binding to TRKB neurotrophin receptors PC Casarotto, M Girych, SM Fred, V Kovaleva, R Moliner, G Enkavi, ... Cell 184 (5), 1299-1313. e19, 2021 | 549 | 2021 |
Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions M Patra, M Karttunen, MT Hyvönen, E Falck, P Lindqvist, I Vattulainen Biophysical journal 84 (6), 3636-3645, 2003 | 534 | 2003 |
Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers M Patra, E Salonen, E Terama, I Vattulainen, R Faller, BW Lee, ... Biophysical journal 90 (4), 1121-1135, 2006 | 480 | 2006 |
Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers E Falck, M Patra, M Karttunen, MT Hyvönen, I Vattulainen Biophysical journal 87 (2), 1076-1091, 2004 | 354 | 2004 |
Multiscale modeling of emergent materials: biological and soft matter T Murtola, A Bunker, I Vattulainen, M Deserno, M Karttunen Physical Chemistry Chemical Physics 11 (12), 1869-1892, 2009 | 334 | 2009 |
Assessing the nature of lipid raft membranes PS Niemelä, S Ollila, MT Hyvönen, M Karttunen, I Vattulainen PLoS computational biology 3 (2), e34, 2007 | 330 | 2007 |
Protein crowding in lipid bilayers gives rise to non-Gaussian anomalous lateral diffusion of phospholipids and proteins JH Jeon, M Javanainen, H Martinez-Seara, R Metzler, I Vattulainen Physical Review X 6 (2), 021006, 2016 | 315 | 2016 |
How would you integrate the equations of motion in dissipative particle dynamics simulations? P Nikunen, M Karttunen, I Vattulainen Computer physics communications 153 (3), 407-423, 2003 | 301 | 2003 |
Coarse-graining polymers with the MARTINI force-field: polystyrene as a benchmark case G Rossi, L Monticelli, SR Puisto, I Vattulainen, T Ala-Nissila Soft Matter 7 (2), 698-708, 2011 | 296 | 2011 |
Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance G Enkavi, M Javanainen, W Kulig, T Róg, I Vattulainen Chemical reviews 119 (9), 5607-5774, 2019 | 294 | 2019 |
BODIPY‐cholesterol: a new tool to visualize sterol trafficking in living cells and organisms M Hölttä‐Vuori, RL Uronen, J Repakova, E Salonen, I Vattulainen, ... Traffic 9 (11), 1839-1849, 2008 | 288 | 2008 |
Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the … AA Gurtovenko, I Vattulainen The Journal of Physical Chemistry B 112 (7), 1953-1962, 2008 | 288 | 2008 |
Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans KH Pietiläinen, T Rog, T Seppänen-Laakso, S Virtue, P Gopalacharyulu, ... PLoS biology 9 (6), e1000623, 2011 | 286 | 2011 |
Psychedelics promote plasticity by directly binding to BDNF receptor TrkB R Moliner, M Girych, CA Brunello, V Kovaleva, C Biojone, G Enkavi, ... Nature Neuroscience 26 (6), 1032-1041, 2023 | 266 | 2023 |
3D pressure field in lipid membranes and membrane-protein complexes OHS Ollila, HJ Risselada, M Louhivuori, E Lindahl, I Vattulainen, ... Physical review letters 102 (7), 078101, 2009 | 257 | 2009 |
Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models I Vattulainen, M Karttunen, G Besold, JM Polson The Journal of chemical physics 116 (10), 3967-3979, 2002 | 250 | 2002 |
Lipid bilayers driven to a wrong lane in molecular dynamics simulations by subtle changes in long-range electrostatic interactions M Patra, M Karttunen, MT Hyvönen, E Falck, I Vattulainen The Journal of Physical Chemistry B 108 (14), 4485-4494, 2004 | 247 | 2004 |