Kamu erişimi zorunlu olan makaleler - David R KelleyDaha fazla bilgi edinin
Bir yerde sunuluyor: 30
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ...
Nature Protocols 7 (3), 562-578, 2012
Zorunlu olanlar: US National Institutes of Health
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10, 1-10, 2009
Zorunlu olanlar: US National Institutes of Health
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
DR Kelley, J Snoek, JL Rinn
Genome research 26 (7), 990-999, 2016
Zorunlu olanlar: US National Institutes of Health
Quake: quality-aware detection and correction of sequencing errors
DR Kelley, MC Schatz, SL Salzberg
Genome Biology 11 (11), R116, 2010
Zorunlu olanlar: US National Institutes of Health
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ...
Nature structural & molecular biology 21 (2), 198-206, 2014
Zorunlu olanlar: US National Institutes of Health, Howard Hughes Medical Institute
Assemblathon 1: A competitive assessment of de novo short read assembly methods
DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ...
Genome Research, 2011
Zorunlu olanlar: US National Institutes of Health, Howard Hughes Medical Institute
Transposable elements reveal a stem cell specific class of long noncoding RNAs
DR Kelley, JL Rinn
Genome Biology 13 (11), R107, 2012
Zorunlu olanlar: US National Institutes of Health
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ...
Cell 153 (5), 1149-1163, 2013
Zorunlu olanlar: US National Institutes of Health
Long noncoding RNAs regulate adipogenesis
L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ...
Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013
Zorunlu olanlar: US National Institutes of Health
Sequential regulatory activity prediction across chromosomes with convolutional neural networks
DR Kelley, YA Reshef, M Bileschi, D Belanger, CY McLean, J Snoek
Genome research 28 (5), 739-750, 2018
Zorunlu olanlar: US National Institutes of Health
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ...
BMC genomics 9, 1-16, 2008
Zorunlu olanlar: US National Institutes of Health
Widespread RNA binding by chromatin-associated proteins
D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn
Genome biology 17, 1-18, 2016
Zorunlu olanlar: US National Institutes of Health
Predicting 3D genome folding from DNA sequence with Akita
G Fudenberg, DR Kelley, KS Pollard
Nature Methods 17 (11), 1111-1117, 2020
Zorunlu olanlar: US National Institutes of Health
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering
DR Kelley, B Liu, AL Delcher, M Pop, SL Salzberg
Nucleic Acids Research 40 (1), e9-e9, 2012
Zorunlu olanlar: US National Institutes of Health
Genetic determinants and epigenetic effects of pioneer-factor occupancy
J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ...
Nature genetics 50 (2), 250-258, 2018
Zorunlu olanlar: US National Institutes of Health, Federal Ministry of Education and Research …
Clustering metagenomic sequences with interpolated Markov models
D Kelley, S Salzberg
BMC Bioinformatics 11 (1), 544, 2010
Zorunlu olanlar: US National Institutes of Health
Detection and correction of false segmental duplications caused by genome mis-assembly
DR Kelley, SL Salzberg
Genome Biology 11 (3), R28, 2010
Zorunlu olanlar: US National Institutes of Health
Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions
DR Kelley, DG Hendrickson, D Tenen, JL Rinn
Genome Biology 15 (12), 537, 2014
Zorunlu olanlar: US National Institutes of Health
Leveraging supervised learning for functionally informed fine-mapping of cis-eQTLs identifies an additional 20,913 putative causal eQTLs
QS Wang, DR Kelley, J Ulirsch, M Kanai, S Sadhuka, R Cui, C Albors, ...
Nature Communications 12 (1), 3394, 2021
Zorunlu olanlar: US National Institutes of Health, UK Medical Research Council
Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
ME Feigin, T Garvin, P Bailey, N Waddell, DK Chang, DR Kelley, S Shuai, ...
Nature genetics 49 (6), 825-833, 2017
Zorunlu olanlar: US Department of Defense, US National Institutes of Health, Cancer Research …
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