| Amber 2023 DA Case, HM Aktulga, K Belfon, IY Ben-Shalom, JT Berryman, SR Brozell, ... University of California, San Francisco, 2023 | 5977 | 2023 |
| AMBER 20 DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, ... University of California: San Francisco, CA, USA, 2020 | 372 | 2020 |
| Role of Mg2+ in Hammerhead Ribozyme Catalysis from Molecular Simulation TS Lee, CS López, GM Giambaşu, M Martick, WG Scott, DM York Journal of the American Chemical Society 130 (10), 3053-3064, 2008 | 142 | 2008 |
| Force Field for Mg2+, Mn2+, Zn2+, and Cd2+ Ions That Have Balanced Interactions with Nucleic Acids MT Panteva, GM Giambasu, DM York The Journal of Physical Chemistry B 119 (50), 15460-15470, 2015 | 132 | 2015 |
| Ion counting from explicit-solvent simulations and 3D-RISM GM Giambaşu, T Luchko, D Herschlag, DM York, DA Case Biophysical journal 106 (4), 883-894, 2014 | 117 | 2014 |
| Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg2+ ion models commonly used in biomolecular simulations MT Panteva, GM Giambaşu, DM York Journal of computational chemistry 36 (13), 970-982, 2015 | 100 | 2015 |
| Amber 2020: University of california DA Case, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, T Cheatham, ... San Francisco, 2020 | 81 | 2020 |
| Cation–anion interactions within the nucleic acid ion atmosphere revealed by ion counting M Gebala, GM Giambaşu, J Lipfert, N Bisaria, S Bonilla, G Li, DM York, ... Journal of the American Chemical Society 137 (46), 14705-14715, 2015 | 78 | 2015 |
| A variational linear-scaling framework to build practical, efficient next-generation orbital-based quantum force fields TJ Giese, H Chen, T Dissanayake, GM Giambasu, H Heldenbrand, ... Journal of chemical theory and computation 9 (3), 1417-1427, 2013 | 69 | 2013 |
| Predicting site-binding modes of ions and water to nucleic acids using molecular solvation theory GM Giambasu, DA Case, DM York Journal of the American Chemical Society 141 (6), 2435-2445, 2019 | 58 | 2019 |
| Threshold occupancy and specific cation binding modes in the hammerhead ribozyme active site are required for active conformation TS Lee, GM Giambaşu, CP Sosa, M Martick, WG Scott, DM York Journal of molecular biology 388 (1), 195-206, 2009 | 56 | 2009 |
| Influence of C-5 substituted cytosine and related nucleoside analogs on the formation of benzo[a]pyrene diol epoxide-dG adducts at CG base pairs of DNA R Guza, D Kotandeniya, K Murphy, T Dissanayake, C Lin, GM Giambasu, ... Nucleic acids research 39 (9), 3988-4006, 2011 | 55 | 2011 |
| Competitive interaction of monovalent cations with DNA from 3D-RISM GM Giambaşu, MK Gebala, MT Panteva, T Luchko, DA Case, DM York Nucleic acids research 43 (17), 8405-8415, 2015 | 48 | 2015 |
| Amber 2020. 2020 DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, TEI Cheatham, ... There is no corresponding record for this reference, 2019 | 41 | 2019 |
| Evidence for the role of active site residues in the hairpin ribozyme from molecular simulations along the reaction path H Heldenbrand, PA Janowski, G Giambaşu, TJ Giese, JE Wedekind, ... Journal of the American Chemical Society 136 (22), 7789-7792, 2014 | 41 | 2014 |
| Characterization of the structure and dynamics of the HDV ribozyme in different stages along the reaction path TS Lee, GM Giambasu, ME Harris, DM York The journal of physical chemistry letters 2 (20), 2538-2543, 2011 | 41 | 2011 |
| Modulating RNA alignment using directional dynamic kinks: application in determining an atomic-resolution ensemble for a hairpin using NMR residual dipolar couplings L Salmon, GM Giambasu, EN Nikolova, K Petzold, A Bhattacharya, ... Journal of the American Chemical Society 137 (40), 12954-12965, 2015 | 40 | 2015 |
| Structural fidelity and NMR relaxation analysis in a prototype RNA hairpin GM Giambaşu, DM York, DA Case Rna 21 (5), 963-974, 2015 | 32 | 2015 |
| Multiscale methods for computational RNA enzymology MT Panteva, T Dissanayake, H Chen, BK Radak, ER Kuechler, ... Methods in enzymology 553, 335-374, 2015 | 29 | 2015 |
| AMBER 2020 TA Darden, RE Duke, G Giambasu, MK Gilson, H Gohlke, AW Goetz, ... University of California: San Francisco, 2020 | 21 | 2020 |
Taisung LeeRutgers Universityrutgers.edu üzerinde doğrulanmış e-posta adresine sahip