| Probalign: multiple sequence alignment using partition function posterior probabilities U Roshan, DR Livesay Bioinformatics 22 (22), 2715-2721, 2006 | 285 | 2006 |
| Diametrical clustering for identifying anti-correlated gene clusters IS Dhillon, EM Marcotte, U Roshan Bioinformatics 19 (13), 1612-1619, 2003 | 157 | 2003 |
| Rec-I-DCM3: a fast algorithmic technique for reconstructing phylogenetic trees UW Roshan, T Warnow, BME Moret, TL Williams Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004 | 147 | 2004 |
| A multi-path 2.5 dimensional convolutional neural network system for segmenting stroke lesions in brain MRI images Y Xue, FG Farhat, O Boukrina, AM Barrett, JR Binder, UW Roshan, ... NeuroImage: Clinical 25, 102118, 2020 | 91 | 2020 |
| Designing fast converging phylogenetic methods L Nakhleh, U Roshan, KS John, J Sun, TJ Warnow ISMB (Supplement of Bioinformatics), 190-198, 2001 | 72 | 2001 |
| Sequence-length requirements for phylogenetic methods BME Moret, U Roshan, T Warnow Algorithms in Bioinformatics: Second International Workshop, WABI 2002 Rome …, 2002 | 70 | 2002 |
| Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest U Roshan, S Chikkagoudar, Z Wei, K Wang, H Hakonarson Nucleic acids research 39 (9), e62-e62, 2011 | 66 | 2011 |
| The accuracy of fast phylogenetic methods for large datasets L Nakhleh, BME Moret, U Roshan, K St. John, J Sun, T Warnow Biocomputing 2002, 211-222, 2001 | 66 | 2001 |
| Performance of supertree methods on various data set decompositions U Roshan, BME Moret, TL Williams, T Warnow Phylogenetic Supertrees: Combining information to reveal the Tree of Life …, 2004 | 59 | 2004 |
| Computational grand challenges in assembling the tree of life: Problems and solutions DA Bader, U Roshan, A Stamatakis Advances in computers 68, 127-176, 2006 | 42 | 2006 |
| Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them KM Kjer, U Roshan, JJ Gillespie | 38 | 2009 |
| Brain tumor classification with tumor segmentations and a dual path residual convolutional neural network from MRI and pathology images Y Xue, Y Yang, FG Farhat, FY Shih, O Boukrina, AM Barrett, JR Binder, ... Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries …, 2020 | 28 | 2020 |
| Reconstruction of large phylogenetic trees: a parallel approach Z Du, F Lin, UW Roshan Computational Biology and Chemistry 29 (4), 273-280, 2005 | 26 | 2005 |
| Vessel lumen segmentation in internal carotid artery ultrasounds with deep convolutional neural networks M Xie, Y Li, Y Xue, R Shafritz, SA Rahimi, JW Ady, UW Roshan 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 24 | 2019 |
| The relationship between maximum parsimony scores and phylogenetic tree topologies TL Williams, BMT Berger-Wolf, U Roshan, T Warnow Personal Communication, 2004 | 22 | 2004 |
| A multi-path decoder network for brain tumor segmentation Y Xue, M Xie, FG Farhat, O Boukrina, AM Barrett, JR Binder, UW Roshan, ... Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries …, 2020 | 19 | 2020 |
| The performance of phylogenetic methods on trees of bounded diameter L Nakhleh, U Roshan, KS John, J Sun, T Warnow Algorithms in Bioinformatics: First International Workshop, WABI 2001 Århus …, 2001 | 19 | 2001 |
| Two-stage and dual-decoder convolutional U-Net ensembles for reliable vessel and plaque segmentation in carotid ultrasound images M Xie, Y Li, Y Xue, L Huntress, W Beckerman, SA Rahimi, JW Ady, ... 2020 19th IEEE International Conference on Machine Learning and Applications …, 2020 | 18 | 2020 |
| Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood Z Du, A Stamatakis, F Lin, U Roshan, L Nakhleh International Conference on High Performance Computing and Communications …, 2005 | 18 | 2005 |
| Multiple sequence alignment using Probcons and Probalign U Roshan Multiple Sequence Alignment Methods, 147-153, 2014 | 15 | 2014 |
