| Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 337 | 2011 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 256 | 2020 |
| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 63 | 2016 |
| Notions of similarity for systems biology models R Henkel, R Hoehndorf, T Kacprowski, C Knüpfer, W Liebermeister, ... Briefings in bioinformatics 19 (1), 77-88, 2018 | 30 | 2018 |
| Structure, function, and behaviour of computational models in systems biology C Knüpfer, C Beckstein, P Dittrich, NL Novère BMC systems biology 7, 1-14, 2013 | 20 | 2013 |
| Towards a Semantic Description of Bio-Models: Meaning Facets-A Case Study. C Knüpfer, C Beckstein, P Dittrich SMBM, 2006 | 12 | 2006 |
| A. andFinney, M M Courtot, N Juty, C Knüpfer, D Waltemath, A Dräger Golebiewski, S. Hoops, S. Keating, D. Kell, S. Kerrien, J. Lawson, A. Lister …, 2011 | 8 | 2011 |
| Function of dynamic models in systems biology: linking structure to behaviour C Knüpfer, C Beckstein Journal of biomedical semantics 4, 1-9, 2013 | 7 | 2013 |
| SBML level 3 package proposal: annotation D Waltemath, N Swainston, AL Lister, F Bergmann, R Henkel, S Hoops, ... Nature Publishing Group, 2011 | 5 | 2011 |
| Artificial gene regulation: A data source for validation of reverse bioengineering C Knüpfer, P Dittrich, C Beckstein Proceedings of the 6th German Workshop on Artificial Life (GWAL6), 66-75, 2004 | 5 | 2004 |
| Notions of similarity for computational biology models R Henkel, R Hoehndorf, T Kacprowski, C Knüpfer, W Liebermeister, ... bioRxiv, 044818, 2016 | 2 | 2016 |
| Ontologies for use in Systems Biology: SBO, KiSAO and TEDDY N Juty, N Le Novère, D Waltemath, C Knuepfer Nature Precedings, 1-1, 2010 | 2 | 2010 |
| How to formalise the meaning of a bio-model: a case study C Knüpfer, C Beckstein, P Dittrich BMC Systems Biology 1 (Suppl 1), P28, 2007 | 2 | 2007 |
| Beyond Structure: KiSAO and TEDDY--Two Ontologies Addressing Pragmatical and Dynamical Aspects of Computational Models in Systems Biology D Köhn, N Le Novere, C Knüpfer Nature Precedings, 1-1, 2009 | 1 | 2009 |
| Digitale Prosopographie C Beckstein, R Gramsch-Stehfest, C Beck, J Engelhardt, C Knüpfer, ... Digital History: Konzepte, Methoden und Kritiken Digitaler …, 2022 | | 2022 |
| Datengetriebene Geschichtswissenschaft: eine Wissensbasis für die mittelalterliche Verfassungs-und Sozialgeschichte C Beck, C Beckstein, R Gramsch, C Knüpfer | | 2017 |
| Datengetriebene Geschichtswissenschaft: eine Wissensbasis für die mittelalterliche Verfassungs-und Sozialgeschichte C Beckstein, R Gramsch-Stehfest, C Knüpfer, C Beck Friedrich-Schiller-Universität Jena, 2017 | | 2017 |
| Struktur, Funktion und Verhalten dynamischer Modelle der Systembiologie: formale Wissensrepräsentation als Grundlage für computergestützte Modellierung und Simulation C Knüpfer | | 2015 |
| Function of Bio-Models: Linking Structure to Behaviour C Beckstein, C Knüpfer GI WORKGROUP “ONTOLOGIES IN BIOMEDICINE AND LIFE SCIENCES”(OBML), 2012 | | 2012 |
| SBML Level 3 Package Proposal: Annotation M Hucka, C Laibe, N Juty, W Liebermeister, S Keating, C Lloyd, ... Nature Precedings, 1-1, 2011 | | 2011 |
