Takip et
José María Fernández
José María Fernández
Senior Research Engineer, Barcelona Supercomputing Center
bsc.es üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
Genetic drivers of epigenetic and transcriptional variation in human immune cells
L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ...
Cell 167 (5), 1398-1414. e24, 2016
7182016
Reductive genome evolution in Buchnera aphidicola
RCHJ Van Ham, J Kamerbeek, C Palacios, C Rausell, F Abascal, ...
Proceedings of the National Academy of Sciences 100 (2), 581-586, 2003
6082003
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
4512016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
4452019
The BLUEPRINT data analysis portal
JM Fernández, V de la Torre, D Richardson, R Royo, M Puiggròs, ...
Cell systems 3 (5), 491-495. e5, 2016
1532016
iHOP web services
JM Fernandez, R Hoffmann, A Valencia
Nucleic acids research 35 (suppl_2), W21-W26, 2007
1392007
Packaging research artefacts with RO-Crate
S Soiland-Reyes, P Sefton, M Crosas, LJ Castro, F Coppens, ...
Data Science 5 (2), 97-138, 2022
1332022
Interoperability with Moby 1.0-it's better than sharing your toothbrush!
M Wilkinson
Nature Precedings, 1-1, 2008
1282008
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18, 1-17, 2017
1242017
Implementing FAIR digital objects in the EOSC-Life workflow collaboratory
C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ...
732024
Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction
J Tamames, D Clark, J Herrero, J Dopazo, C Blaschke, JM Fernández, ...
Journal of Biotechnology 98 (2-3), 269-283, 2002
612002
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1, 1-19, 2010
552010
Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation
JK Hériché, JG Lees, I Morilla, T Walter, B Petrova, MJ Roberti, ...
Molecular biology of the cell 25 (16), 2522-2536, 2014
542014
The RD‐Connect Genome‐Phenome Analysis Platform: Accelerating diagnosis, research, and gene discovery for rare diseases
S Laurie, D Piscia, L Matalonga, A Corvó, M Fernández‐Callejo, ...
Human mutation 43 (6), 717-733, 2022
512022
The Quest for Orthologs benchmark service and consensus calls in 2020
AM Altenhoff, J Garrayo-Ventas, S Cosentino, D Emms, NM Glover, ...
Nucleic acids research 48 (W1), W538-W545, 2020
482020
RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses
M Rubio-Camarillo, G Gómez-López, JM Fernández, A Valencia, ...
Bioinformatics 29 (13), 1687-1689, 2013
482013
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships
J Sánchez-Valle, H Tejero, JM Fernández, D Juan, B Urda-García, ...
Nature Communications 11 (1), 2854, 2020
452020
The EMBRACE web service collection
S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
442010
The eTRANSAFE project on translational safety assessment through integrative knowledge management: achievements and perspectives
F Pognan, T Steger-Hartmann, C Díaz, N Blomberg, F Bringezu, K Briggs, ...
Pharmaceuticals 14 (3), 237, 2021
332021
Lessons learned: recommendations for establishing critical periodic scientific benchmarking
S Capella-Gutierrez, D Iglesia, J Haas, A Lourenco, JM Fernández, ...
BioRxiv, 181677, 2017
322017
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Makaleler 1–20