| CARD-FISH in the sequencing era: opening a new universe of protistan ecology K Piwosz, I Mukherjee, MM Salcher, V Grujčić, K Šimek Frontiers in microbiology 12, 640066, 2021 | 45 | 2021 |
| Testing the efficiency of temperate benthic biotic indices in assessing the ecological status of a tropical ecosystem SK Sivadas, R Nagesh, GVM Gupta, U Gaonkar, I Mukherjee, D Ramteke, ... Marine pollution bulletin 106 (1-2), 62-76, 2016 | 43 | 2016 |
| Kinetoplastid flagellates overlooked by universal primers dominate in the oxygenated hypolimnion of Lake Biwa, Japan I Mukherjee, Y Hodoki, S Nakano FEMS microbiology ecology 91 (8), fiv083, 2015 | 40 | 2015 |
| High-resolution metagenomic reconstruction of the freshwater spring bloom VS Kavagutti, PA Bulzu, CM Chiriac, MM Salcher, I Mukherjee, ... Microbiome 11 (1), 15, 2023 | 29 | 2023 |
| Widespread dominance of kinetoplastids and unexpected presence of diplonemids in deep freshwater lakes I Mukherjee, Y Hodoki, Y Okazaki, S Fujinaga, K Ohbayashi, S Nakano Frontiers in Microbiology 10, 2375, 2019 | 26 | 2019 |
| A freshwater radiation of diplonemids I Mukherjee, MM Salcher, AŞ Andrei, VS Kavagutti, T Shabarova, ... Environmental Microbiology 22 (11), 4658-4668, 2020 | 25 | 2020 |
| Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes K Šimek, V Grujčić, I Mukherjee, V Kasalický, J Nedoma, T Posch, ... FEMS microbiology ecology 96 (10), fiaa121, 2020 | 22 | 2020 |
| CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes K Šimek, I Mukherjee, J Nedoma, CCP de Paula, J Jezberová, D Sirová, ... Environmental Microbiology, 2021 | 18 | 2021 |
| Seasonal dynamics of heterotrophic and plastidic protists in the water column of Lake Biwa, Japan I Mukherjee, Y Hodoki, S Nakano Aquatic Microbial Ecology 80 (2), 123-137, 2017 | 17 | 2017 |
| Macrobenthic community structure of coastal Arabian Sea during the Fall intermonsoon AG B.S. Ingole, Udaykumar V. Gaonkar, Abhay Deshmukh, Indranil Mukherjee ... Indian Journal of Geo-Marine Sciences 43 (12), 2014 | 12 | 2014 |
| Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores K Šimek, I Mukherjee, T Szöke-Nagy, M Haber, MM Salcher, R Ghai The ISME Journal 17 (1), 84-94, 2023 | 11 | 2023 |
| Interactions between trophic levels in upwelling and non-upwelling regions during summer monsoon A Malik, CEG Fernandes, MJBD Gonsalves, NS Subina, SS Mamatha, ... Journal of sea research 95, 56-69, 2015 | 9 | 2015 |
| In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model H Park, T Shabarova, MM Salcher, L Kosová, P Rychtecký, I Mukherjee, ... Microbiome 11 (1), 112, 2023 | 7 | 2023 |
| Comparative studies of codon usage profile of Anisakis simplex (Nematoda) and Carassius gibelio (Prussian carp) W Ahmed, S Gupta, I Mukherjee, V Babu, R Singh Journal of Environmental Biology 43, 123-132, 2022 | 4 | 2022 |
| Rickettsiales’ deep evolutionary history sheds light on the emergence of intracellular lifestyles LS Moncadas, T Shabarova, VS Kavagutti, PA Bulzu, MC Chiriac, SJ Park, ... bioRxiv, 2023.01. 31.526412, 2023 | 3 | 2023 |
| Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir I Mukherjee, V Grujčić, MM Salcher, P Znachor, J Seďa, M Devetter, ... Environmental Microbiome 19 (1), 31, 2024 | 2 | 2024 |
| First record of the synaptid holothurian Protankyrian protankyra Bidentata (Woodward and Barrett, 1858) from the Indian Ocean A Deshmukh, BS Ingole, I Mukharjee, SK Sivadas Indian J Fish, 2015 | 2 | 2015 |
| Depth-dependent dynamics of protist communities as an integral part of spring succession in a freshwater reservoir I Mukherjee, V Grujčić, MM Salcher, P Znachor, J Seďa, M Devetter, ... bioRxiv, 2024.02. 01.578394, 2024 | | 2024 |
| Global freshwater distribution of Telonemia protists R Boukheloua, I Mukherjee, H Park, K Šimek, V Kasalický, M Ngochera, ... The ISME journal 18 (1), wrae177, 2024 | | 2024 |
| Microbial dynamics of the spring bloom in a freshwater reservoir VS Kavagutti, PA Bulzu, CM Chiriac, MM Salcher, I Mukherjee, ... | | 2023 |
