Jennifer Lu, Ph. D.

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerifierad e-postadress på jhu.edu
Florian P BreitwieserPrincipal Software Engineer at SOPHiA GeneticsVerifierad e-postadress på jhu.edu
Derrick WoodBlackjack BiotechnologiesVerifierad e-postadress på cs.jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityVerifierad e-postadress på cs.jhu.edu
Peter M. ThielenSenior Professional Staff, Johns Hopkins University Applied Physics LaboratoryVerifierad e-postadress på jhuapl.edu
Martin SteineggerAssociate Professor, Seoul National University, KoreaVerifierad e-postadress på snu.ac.kr
charles eberhartProfessor of Pathology, Ophthalmology and Oncology, Johns Hopkins University School of MedicineVerifierad e-postadress på jhmi.edu
Nicolas Rey-VillamizarUniversity of HoustonVerifierad e-postadress på uh.edu
Yanbin LuPhDVerifierad e-postadress på uh.edu
Badrinath Roysam, FIEEE, FAIMBEECE Department, University of HoustonVerifierad e-postadress på uh.edu
Navin VaradarajanMD Anderson Professor, University of HoustonVerifierad e-postadress på uh.edu
Ivan LiadiPost-doctoral Fellow, The University of Texas M.D. Anderson Cancer CenterVerifierad e-postadress på mdanderson.org
Joshua FernJohns Hopkins UniversityVerifierad e-postadress på jhu.edu
Rebecca SchulmanJohns Hopkins UniversityVerifierad e-postadress på jhu.edu
Gabrielle RomainScientist in Cell Design Labs

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Jennifer Lu, Ph. D.

Staff Scientist, Johns Hopkins University

Verifierad e-postadress på jhmi.edu - Startsida

Computational Biology Computational Genomics Human Microbiome Research Human Microbial Infections


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome Biology 20 (257), 2019	4865	2019
Bracken: Estimating species abundance in metagenomics data J Lu, FP Breitwieser, P Thielen, SL Salzberg PeerJ Computer Science 3, e104, 2017	1532	2017
A review of methods and databases for metagenomic classification and assembly FP Breitwieser, J Lu, SL Salzberg Briefings in Bioinformatics 20 (4), 1125-1136, 2017	635	2017
Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature Protocols, 2022	344	2022
Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2 J Lu, SL Salzberg Microbiome 8 (1), 124, 2020	210	2020
Bracken: estimating species abundance in metagenomics data. PeerJ Comput Sci 3: e104 J Lu, FP Breitwieser, P Thielen, SL Salzberg	152	2017
Removing contaminants from databases of draft genomes J Lu, SL Salzberg PLoS computational biology 14 (6), e1006277, 2018	120	2018
Major data analysis errors invalidate cancer microbiome findings A Gihawi, Y Ge, J Lu, D Puiu, A Xu, CS Cooper, DS Brewer, M Pertea, ... bioRxiv, 2023.07. 28.550993, 2023	101	2023
Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing Z Li, FP Breitwieser, J Lu, AS Jun, L Asnaghi, SL Salzberg, CG Eberhart Investigative Ophthalmology & Visual Science 59 (1), 280-288, 2018	67	2018
Automated profiling of individual cell–cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING) A Merouane, N Rey-Villamizar, Y Lu, I Liadi, G Romain, J Lu, H Singh, ... Bioinformatics 31 (19), 3189-3197, 2015	66	2015
SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes J Lu, SL Salzberg PLoS computational biology 16 (12), e1008439, 2020	57	2020
The Energy Landscape for the Self-Assembly of a Two-Dimensional DNA Origami Complex J Fern, J Lu, R Schulman ACS nano 10 (2), 1836-1844, 2016	20	2016
Identification of microbial agents in tissue specimens of ocular and periocular sarcoidosis using a metagenomics approach AS Shifera, C Pockrandt, N Rincon, Y Ge, J Lu, A Varabyou, AE Jedlicka, ... F1000Research 10 (820), 820, 2021	7	2021
Novel metagenomics analysis of stony coral tissue loss disease JM Heinz, J Lu, LK Huebner, SL Salzberg, M Sommer, SM Rosales G3 Genes\|Genomes\|Genetics, 2024	2	2024
Detection of Penicillin Nonsusceptible Streptococcus agalactiae by Laboratories That Participate in the College of American Pathologist’s Proficiency Testing Program RM Humphries, J Lu, I Martin, CA Rauch, C Wojewoda, Y McCarter, ... Journal of clinical microbiology 61 (8), e00595-23, 2023	2	2023
Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like bla_KPC bearing plasmids PJ Simner, Y Bergman, Y Fan, EB Jacobs, S Ramakrishnan, J Lu, S Lewis, ... JAC-Antimicrobial Resistance 5 (3), dlad061, 2023	1	2023
Metagenomic next generation sequencing of plasma RNA for diagnosis of unexplained, acute febrile illness in Uganda AJ Kandathil, PW Blair, J Lu, R Anantharam, K Kobba, ML Robinson, ... PLOS Neglected Tropical Diseases 18 (9), e0012451, 2024		2024
No Evidence of Chronic Infection in a Metagenomic Sequencing Study of the Keratoconus Corneal Epithelium P Kaur, L Moon, D Srikumaran, SL Salzberg, J Lu, PJ Simner, ... Journal of Clinical Medicine 13 (12), 3399, 2024		2024

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