| CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ... Nucleic acids research 46 (W1), W246-W251, 2018 | 1202 | 2018 |
| The pan-immune system of bacteria: antiviral defence as a community resource A Bernheim, R Sorek Nature reviews microbiology 18 (2), 113-119, 2020 | 566 | 2020 |
| Systematic and quantitative view of the antiviral arsenal of prokaryotes F Tesson, A Hervé, E Mordret, M Touchon, C d’Humières, J Cury, ... Nature communications 13 (1), 2561, 2022 | 446* | 2022 |
| Genetic and life-history traits associated with the distribution of prophages in bacteria M Touchon, A Bernheim, EPC Rocha The ISME journal 10 (11), 2744-2754, 2016 | 362 | 2016 |
| Bacterial retrons function in anti-phage defense A Millman, A Bernheim, A Stokar-Avihail, T Fedorenko, M Voichek, ... Cell 183 (6), 1551-1561. e12, 2020 | 340 | 2020 |
| An expanded arsenal of immune systems that protect bacteria from phages A Millman, S Melamed, A Leavitt, S Doron, A Bernheim, J Hör, J Garb, ... Cell host & microbe 30 (11), 1556-1569. e5, 2022 | 301 | 2022 |
| The highly diverse antiphage defence systems of bacteria H Georjon, A Bernheim Nature Reviews Microbiology 21 (10), 686-700, 2023 | 238 | 2023 |
| Phages and their satellites encode hotspots of antiviral systems F Rousset, F Depardieu, S Miele, J Dowding, AL Laval, E Lieberman, ... Cell host & microbe 30 (5), 740-753. e5, 2022 | 234 | 2022 |
| Prokaryotic viperins produce diverse antiviral molecules A Bernheim, A Millman, G Ofir, G Meitav, C Avraham, H Shomar, ... Nature 589 (7840), 120-124, 2021 | 232 | 2021 |
| Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion J Garb, A Lopatina, A Bernheim, M Zaremba, V Siksnys, S Melamed, ... Nature microbiology 7 (11), 1849-1856, 2022 | 151 | 2022 |
| A eukaryotic-like serine/threonine kinase protects staphylococci against phages F Depardieu, JP Didier, A Bernheim, A Sherlock, H Molina, B Duclos, ... Cell host & microbe 20 (4), 471-481, 2016 | 111 | 2016 |
| Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria A Bernheim, A Calvo-Villamañán, C Basier, L Cui, EPC Rocha, ... Nature communications 8 (1), 2094, 2017 | 99 | 2017 |
| Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements A Bernheim, D Bikard, M Touchon, EPC Rocha Nucleic acids research 48 (2), 748-760, 2020 | 55 | 2020 |
| Evolutionary and mechanistic diversity of Type IF CRISPR-associated transposons SE Klompe, N Jaber, LY Beh, JT Mohabir, A Bernheim, SH Sternberg Molecular cell 82 (3), 616-628. e5, 2022 | 54 | 2022 |
| Genetic exchanges are more frequent in bacteria encoding capsules O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha PLoS genetics 14 (12), e1007862, 2018 | 47 | 2018 |
| Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs VK Libis, AG Bernheim, C Basier, S Jaramillo-Riveri, M Deyell, ... ACS synthetic biology 3 (12), 1003-1006, 2014 | 41 | 2014 |
| A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria A Bernheim, D Bikard, M Touchon, EPC Rocha Philosophical Transactions of the Royal Society B 374 (1772), 20180088, 2019 | 39 | 2019 |
| Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system? F Tesson, A Bernheim Current Opinion in Microbiology 71, 102238, 2023 | 34 | 2023 |
| Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information B Gaborieau, H Vaysset, F Tesson, I Charachon, N Dib, J Bernier, ... Nature Microbiology 9 (11), 2847-2861, 2024 | 27* | 2024 |
| Conservation of antiviral systems across domains of life reveals immune genes in humans J Cury, M Haudiquet, VH Trejo, E Mordret, A Hanouna, M Rotival, ... Cell Host & Microbe 32 (9), 1594-1607. e5, 2024 | 27* | 2024 |