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Derrick Wood
Derrick Wood
Blackjack Biotechnologies
Verifierad e-postadress på cs.jhu.edu
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Improved metagenomic analysis with Kraken 2
DE Wood, J Lu, B Langmead
Genome Biology 20 (1), 257, 2019
48652019
Kraken: ultrafast metagenomic sequence classification using exact alignments
DE Wood, SL Salzberg
Genome Biology 15 (3), R46, 2014
46652014
Metagenome analysis using the Kraken software suite
J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ...
Nature Protocols, 1-25, 2022
3442022
Unexpected cross-species contamination in genome sequencing projects
S Merchant, DE Wood, SL Salzberg
PeerJ 2, e675, 2014
1762014
EDGE-pro: estimated degree of gene expression in prokaryotic genomes
T Magoc, D Wood, SL Salzberg
Evolutionary Bioinformatics 9, 127-136, 2013
1562013
A machine learning approach for somatic mutation discovery
DE Wood, JR White, A Georgiadis, B Van Emburgh, S Parpart-Li, ...
Science Translational Medicine 10 (457), eaar7939, 2018
1122018
Thousands of missed genes found in bacterial genomes and their analysis with COMBREX
DE Wood, H Lin, A Levy-Moonshine, R Swaminathan, YC Chang, ...
Biology Direct 7 (1), 37, 2012
422012
Automated next-generation profiling of genomic alterations in human cancers
LA Keefer, JR White, DE Wood, KMR Gerding, KC Valkenburg, D Riley, ...
Nature Communications 13 (1), 1-15, 2022
142022
Releasing the Kraken
SL Salzberg, DE Wood
Frontiers in Bioinformatics, 75, 2021
92021
Machine Learning System and Method for Somatic Mutation Discovery
SV Angiuoli, D Wood
US Patent 11,972,841, 2024
72024
Analytical validation of an integrated next-generation sequencing pan-cancer liquid biopsy approach for detection of microsatellite instability
A Georgiadis, D Wood, D Murphy, S Parpart-Li, D Riley, N Sengamalay, ...
Cancer Research 78 (13_Supplement), 1286-1286, 2018
42018
Metagenome analysis using the Kraken software suite (vol 17, pg 2815, 2022)
J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ...
NATURE PROTOCOLS, 2024
2024
Simpler predictive models provide higher accuracy for ovarian cancer detection
DE Wood, J Roy, BJ Ballew
bioRxiv, 2024.12.19.629553, 2024
2024
Microsatellite instability signatures
D Wood
US Patent App. 17/909,537, 2023
2023
Development and Analysis of a Machine Learning Variant Caller
DE Wood, A Georgiadis, JR White, B Van Emburgh, S Parpart-Li, ...
Journal of Molecular Diagnostics 20 (6), 962-962, 2018
2018
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Artiklar 1–15