Ben Langmead

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerifierad e-postadress på jhu.edu
Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterVerifierad e-postadress på fredhutch.org
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerifierad e-postadress på jhsph.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerifierad e-postadress på umd.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerifierad e-postadress på uw.edu
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsVerifierad e-postadress på neumoratx.com
Christopher WilksPhD Student in Computer Science, Johns Hopkins UniversityVerifierad e-postadress på jhu.edu
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardVerifierad e-postadress på ds.dfci.harvard.edu
Daehwan KimOmphalos Lifesciences IncVerifierad e-postadress på omphaloslifesci.com
Travis GagieAssociate Professor at Dalhousie UniversityVerifierad e-postadress på dal.ca
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerifierad e-postadress på cs.jhu.edu
Leonardo Collado-TorresInvestigator at LIBD + Asst. Prof., Department of Biostatistics, JHBSPHVerifierad e-postadress på libd.org
Andrew P. FeinbergDirector, Center for Epigenetics; Bloomberg Distinguished Professor, Johns Hopkins UniversityVerifierad e-postadress på jhu.edu
Derrick WoodBlackjack BiotechnologiesVerifierad e-postadress på cs.jhu.edu
Christina BoucherUniversity of FloridaVerifierad e-postadress på ufl.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityVerifierad e-postadress på jhmi.edu
Hector Corrada BravoAssociate Professor of Computer Science, University of MarylandVerifierad e-postadress på umiacs.umd.edu
Sarven SabunciyanJohns Hopkins UniversityVerifierad e-postadress på jhmi.edu
Giovanni ManziniUniversity of PisaVerifierad e-postadress på unipi.it
Nae-Chyun ChenExai BioVerifierad e-postadress på exai.bio

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Ben Langmead

Associate Professor of Computer Science, Johns Hopkins University

Verifierad e-postadress på cs.jhu.edu - Startsida

Sequence Alignment Computational Genomics Computer Science


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	52345	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24474	2009
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	19522	2015
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome biology 20, 1-13, 2019	4865	2019
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010	2258	2010
Aligning short sequencing reads with Bowtie B Langmead Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010	1480	2010
Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011	1262	2011
Ballgown bridges the gap between transcriptome assembly and expression analysis AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek Nature biotechnology 33 (3), 243-246, 2015	822	2015
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13, 1-10, 2012	821	2012
Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019	729	2019
Searching for SNPs with cloud computing B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	667	2009
Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11, 1-11, 2010	437	2010
Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017	428	2017
Cloud computing and the DNA data race MC Schatz, B Langmead, SL Salzberg Nature biotechnology 28 (7), 691-693, 2010	381	2010
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	373	2018
Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012	368	2012
Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature protocols 17 (12), 2815-2839, 2022	345	2022
Cloud computing for genomic data analysis and collaboration B Langmead, A Nellore Nature Reviews Genetics 19 (4), 208-219, 2018	341	2018
Polyester: simulating RNA-seq datasets with differential transcript expression AC Frazee, AE Jaffe, B Langmead, JT Leek Bioinformatics 31 (17), 2778-2784, 2015	324	2015
Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014	298	2014

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