| Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements B van Dijk, P Hogeweg, HM Doekes, N Takeuchi Elife 9, e56801, 2020 | 39 | 2020 |
| Effect of the latent reservoir on the evolution of HIV at the within-and between-host levels HM Doekes, C Fraser, KA Lythgoe PLoS computational biology 13 (1), e1005228, 2017 | 37 | 2017 |
| Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations HM Doekes, RJ De Boer, R Hermsen PLoS computational biology 15 (8), e1007333, 2019 | 26 | 2019 |
| Repeated outbreaks drive the evolution of bacteriophage communication HM Doekes, GA Mulder, R Hermsen Elife 10, e58410, 2021 | 21 | 2021 |
| Multiscale selection in spatially structured populations HM Doekes, R Hermsen bioRxiv, 2021 | 7 | 2021 |
| Optimal T cell cross-reactivity and the role of regulatory T cells K Saeki, HM Doekes, RJ De Boer Journal of Theoretical Biology 375, 4-12, 2015 | 4 | 2015 |
| How repeated outbreaks drive the evolution of bacteriophage communication: Insights from a mathematical model HM Doekes, GA Mulder, R Hermsen bioRxiv, 2020.04. 29.068247, 2020 | 1 | 2020 |
| Slightly beneficial genes are retained by evolving Horizontal Gene Transfer despite selfish elements B van Dijk, P Hogeweg, HM Doekes, N Takeuchi bioRxiv, 2020.02. 13.947077, 2020 | 1 | 2020 |
| Bacteria maintain slightly beneficial genes and selfish genetic elements through the evolution of horizontal gene transfer B van Dijk, P Hogeweg, H Doekes, N Takeuchi | 1 | 2020 |
| SI code from Multiscale selection in spatially structured populations HM Doekes, R Hermsen | | 2024 |
| Altruism code from Multiscale selection in spatially structured populations HM Doekes, R Hermsen | | 2024 |
| Microbial Evolution at Multiple Scales HM Doekes Utrecht University, 2020 | | 2020 |
