Johannes Söding

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Andrei LupasDirector of the Department of Protein Evolution, Max-Planck-Institute for BiologyPreverjeni e-poštni naslov na tuebingen.mpg.de
Martin SteineggerAssociate Professor, Seoul National University, KoreaPreverjeni e-poštni naslov na snu.ac.kr
Milot MirditaSeoul National UniversityPreverjeni e-poštni naslov na snu.ac.kr
Andreas BiegertPhD Bioinformatics, Gene Center, LMU MunichPreverjeni e-poštni naslov na genzentrum.lmu.de
Vikram AlvaGroup Leader, Max Planck Institute for BiologyPreverjeni e-poštni naslov na tuebingen.mpg.de
Patrick CramerDirector, Max Planck Institute for Biophysical ChemistryPreverjeni e-poštni naslov na mpibpc.mpg.de
Rudolf GrimmProfessor of Physics, University of InnsbruckPreverjeni e-poštni naslov na uibk.ac.at
des higginsUniversity College DublinPreverjeni e-poštni naslov na ucd.ie
Eli Levy KarinELKMOPreverjeni e-poštni naslov na post.tau.ac.il
Holger HartmannGene Center MunichPreverjeni e-poštni naslov na genzentrum.lmu.de
Clovis GaliezGrenoble-Alpes University, Grenoble INP, LJKPreverjeni e-poštni naslov na grenoble-inp.fr
Jean DalibardCollège de France and Laboratoire Kastler BrosselPreverjeni e-poštni naslov na college-de-france.fr
Salma Sohrabi-JahromiMax Planck Institute for Biophysical ChemistryPreverjeni e-poštni naslov na mpibpc.mpg.de
Stefan SeemayerComputational Biologist at BASF SEPreverjeni e-poštni naslov na seemayer.de
Roland BeckmannProfessor for Biochemistry, LMU MunichPreverjeni e-poštni naslov na lmb.uni-muenchen.de
Maria J. MartinEuropean Bioinformatics InstitutePreverjeni e-poštni naslov na ebi.ac.uk
Jessica AndreaniCEA research director at I2BC (France)Preverjeni e-poštni naslov na cea.fr

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Johannes Söding

Max-Planck-Institute for Multidisciplinary Sciences, Göttingen

Preverjeni e-poštni naslov na mpinat.mpg.de - Domača stran

Quantitative and computational biology bioinformatics


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ... Molecular systems biology 7 (1), 539, 2011	16694	2011
The HHpred interactive server for protein homology detection and structure prediction J Söding, A Biegert, AN Lupas Nucleic acids research 33 (suppl_2), W244-W248, 2005	4126	2005
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets M Steinegger, J Söding Nature biotechnology 35 (11), 1026-1028, 2017	3008	2017
Protein homology detection by HMM–HMM comparison J Söding Bioinformatics 21 (7), 951-960, 2005	2965	2005
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment M Remmert, A Biegert, A Hauser, J Söding Nature methods 9 (2), 173-175, 2012	2451	2012
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core L Zimmermann, A Stephens, SZ Nam, D Rau, J Kübler, M Lozajic, ... J. Mol. Biol 430, 2237-2243, 2018	2384	2018
Fast and accurate protein structure search with Foldseek M van Kempen, SS Kim, C Tumescheit, M Mirdita, J Lee, CLM Gilchrist, ... Nature Biotechnology, 1-4, 2023	1063	2023
HH-suite3 for fast remote homology detection and deep protein annotation M Steinegger, M Meier, M Mirdita, H Vöhringer, SJ Haunsberger, J Söding BMC bioinformatics 20, 1-15, 2019	1029	2019
Clustering huge protein sequence sets in linear time M Steinegger, J Söding Nature communications 9 (1), 2542, 2018	798	2018
Uniclust databases of clustered and deeply annotated protein sequences and alignments M Mirdita, L Von Den Driesch, C Galiez, MJ Martin, J Söding, ... Nucleic acids research 45 (D1), D170-D176, 2017	693	2017
Protein sequence analysis using the MPI bioinformatics toolkit F Gabler, SZ Nam, S Till, M Mirdita, M Steinegger, J Söding, AN Lupas, ... Current Protocols in Bioinformatics 72 (1), e108, 2020	669	2020
Uniform transitions of the general RNA polymerase II transcription complex A Mayer, M Lidschreiber, M Siebert, K Leike, J Söding, P Cramer Nature structural & molecular biology 17 (10), 1272-1278, 2010	574	2010
Fast and accurate automatic structure prediction with HHpred A Hildebrand, M Remmert, A Biegert, J Söding Proteins: Structure, Function, and Bioinformatics 77 (S9), 128-132, 2009	543	2009
MMseqs2 desktop and local web server app for fast, interactive sequence searches M Mirdita, M Steinegger, J Söding Bioinformatics 35 (16), 2856-2858, 2019	476	2019
CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations S Seemayer, M Gruber, J Söding Bioinformatics 30 (21), 3128-3130, 2014	476	2014
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold M Steinegger, M Mirdita, J Söding Nature methods 16 (7), 603-606, 2019	424	2019
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis V Alva, SZ Nam, J Söding, AN Lupas Nucleic acids research 44 (W1), W410-W415, 2016	421	2016
Three-body decay of a rubidium Bose–Einstein condensate J Söding, D Guéry-Odelin, P Desbiolles, F Chevy, H Inamori, J Dalibard Applied physics B 69, 257-261, 1999	360	1999
The MPI Bioinformatics Toolkit for protein sequence analysis A Biegert, C Mayer, M Remmert, J Söding, AN Lupas Nucleic acids research 34 (suppl_2), W335-W339, 2006	327	2006
More than the sum of their parts: on the evolution of proteins from peptides J Söding, AN Lupas Bioessays 25 (9), 837-846, 2003	302	2003

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