Spremljaj
Pavel Baranov, "Pasha"
Pavel Baranov, "Pasha"
Professor of Biomolecular Informatics, University College Cork, Ireland
Preverjeni e-poštni naslov na ucc.ie - Domača stran
Naslov
Navedeno
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Leto
Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression
DE Andreev, PBF O'Connor, C Fahey, EM Kenny, IM Terenin, SE Dmitriev, ...
elife 4, e03971, 2015
3892015
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use
JF Atkins, G Loughran, PR Bhatt, AE Firth, PV Baranov
Nucleic acids research 44 (15), 7007-7078, 2016
3562016
Programmed ribosomal frameshifting in decoding the SARS-CoV genome
PV Baranov, CM Henderson, CB Anderson, RF Gesteland, JF Atkins, ...
Virology 332 (2), 498-510, 2005
2982005
Recoding: translational bifurcations in gene expression
PV Baranov, RF Gesteland, JF Atkins
Gene 286 (2), 187-201, 2002
2722002
DARNED: a DAtabase of RNa EDiting in humans
A Kiran, PV Baranov
Bioinformatics 26 (14), 1772-1776, 2010
2712010
Evidence of efficient stop codon readthrough in four mammalian genes
G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ...
Nucleic acids research 42 (14), 8928-8938, 2014
2662014
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov
Nucleic acids research 39 (10), 4220-4234, 2011
2582011
GWIPS-viz: development of a ribo-seq genome browser
AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ...
Nucleic acids research 42 (D1), D859-D864, 2014
2532014
Observation of dually decoded regions of the human genome using ribosome profiling data
AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov
Genome research 22 (11), 2219-2229, 2012
2282012
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling
DE Andreev, PBF O'Connor, G Loughran, SE Dmitriev, PV Baranov, ...
Nucleic acids research 45 (2), 513-526, 2017
1752017
Pyrrolysine and selenocysteine use dissimilar decoding strategies
Y Zhang, PV Baranov, JF Atkins, VN Gladyshev
Journal of Biological Chemistry 280 (21), 20740-20751, 2005
1742005
Standardized annotation of translated open reading frames
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ...
Nature biotechnology 40 (7), 994-999, 2022
1732022
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome
S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ...
Molecular cell 74 (3), 481-493. e6, 2019
1662019
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes
DE Andreev, PBF O’Connor, AV Zhdanov, RI Dmitriev, IN Shatsky, ...
Genome biology 16, 1-14, 2015
1472015
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density
PBF O’Connor, DE Andreev, PV Baranov
Nature communications 7 (1), 12915, 2016
1342016
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Å resolution
F Mueller, I Sommer, P Baranov, R Matadeen, M Stoldt, J WoÈhnert, ...
Journal of molecular biology 298 (1), 35-59, 2000
1202000
eIF2α controls memory consolidation via excitatory and somatostatin neurons
V Sharma, R Sood, A Khlaifia, MJ Eslamizade, TY Hung, D Lou, ...
Nature 586 (7829), 412-416, 2020
1192020
Darned in 2013: inclusion of model organisms and linking with Wikipedia
AM Kiran, JJ O'Mahony, K Sanjeev, PV Baranov
Nucleic acids research 41 (D1), D258-D261, 2012
1172012
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum
SM Heaphy, M Mariotti, VN Gladyshev, JF Atkins, PV Baranov
Molecular biology and evolution 33 (11), 2885-2889, 2016
1162016
Release factor 2 frameshifting sites in different bacteria
PV Baranov, RF Gesteland, JF Atkins
EMBO reports, 2002
1162002
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Članki 1–20