Spremljaj
Alba Cristina Magalhaes Alves de Melo
Alba Cristina Magalhaes Alves de Melo
Professor at the Department of Computer Science - University of Brasilia
Preverjeni e-poštni naslov na unb.br
Naslov
Navedeno
Navedeno
Leto
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences
EFO Sandes, ACMA de Melo
Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010
902010
Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU
EFO Sandes, ACMA de Melo
IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012
852012
CUDAlign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in GPU clusters
EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016
802016
Smith-waterman alignment of huge sequences with gpu in linear space
EFO Sandes, ACMA de Melo
2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011
662011
A parallel strategy for biological sequence alignment in restricted memory space
RB Batista, A Boukerche, ACMA de Melo
Journal of Parallel and Distributed Computing 68 (4), 548-561, 2008
592008
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
D Sundfeld, JH Havgaard, ACMA de Melo, J Gorodkin
Bioinformatics 32 (8), 1238-1240, 2016
472016
A hardware accelerator for the fast retrieval of DIALIGN biological sequence alignments in linear space
A Boukerche, JM Correa, ACM Melo, RP Jacobi
IEEE Transactions on Computers 59 (6), 808-821, 2010
472010
CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters
EFO Sandes, G Miranda, ACMA de Melo, X Martorell, E Ayguadé
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
422014
Statistical analysis of Amazon EC2 cloud pricing models
G Portella, GN Rodrigues, E Nakano, ACMA Melo
Concurrency and Computation: Practice and Experience 31 (18), e4451, 2019
392019
Parallel strategies for local biological sequence alignment in a cluster of workstations
A Boukerche, ACMA de Melo, M Ayala-Rincón
19th IEEE International Parallel and Distributed Processing Symposium, 8 pp., 2005
382005
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines
G Teodoro, TM Kurç, LFR Taveira, ACMA Melo, Y Gao, J Kong, JH Saltz
Bioinformatics 33 (7), 1064-1072, 2017
372017
An extensible resource discovery mechanism for grid computing environments
TG Ramos, ACMA de Melo
Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID …, 2006
362006
Multiagent system for dynamic resource provisioning in cloud computing platforms
CG Ralha, AHD Mendes, LA Laranjeira, APF Araújo, ACMA Melo
Future generation computer systems 94, 80-96, 2019
352019
Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method
AF Leite, V Alves, R G. N., T C., E C., ACMA Melo
IEEE Society, 2015
342015
Parallel optimal pairwise biological sequence comparison: Algorithms, platforms, and classification
EFDO Sandes, A Boukerche, ACMAD Melo
ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016
322016
MASA: A multiplatform architecture for sequence aligners with block pruning
EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ...
ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016
322016
An exact parallel algorithm to compare very long biological sequences in clusters of workstations
A Boukerche, ACMA de Melo, EFO Sandes, M Ayala-Rincon
Cluster Computing 10, 187-202, 2007
242007
Parallel smith-waterman comparison on multicore and manycore computing platforms with BSP++
K Hamidouche, FM Mendonca, J Falcou, ACMA de Melo, D Etiemble
International Journal of Parallel Programming 41, 111-136, 2013
232013
Comparing two long biological sequences using a dsm system
RCF Melo, MET Walter, ACMA Melo, R Batista, M Nardelli, T Martins, ...
Euro-Par 2003 Parallel Processing: 9th International Euro-Par Conference …, 2003
232003
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework
ACMAM Melo
HICSS-32 - Proceedings of the 32nd Annual Hawaii International Conference …, 1999
231999
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