| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 419 | 2020 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 210 | 2021 |
| Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate S Ferreira, R Pereira, F Liu, P Vilaça, I Rocha Biotechnology for Biofuels 12, 1-14, 2019 | 17 | 2019 |
| Development and application of efficient pathway enumeration algorithms for metabolic engineering applications F Liu, P Vilaça, I Rocha, M Rocha Computer methods and programs in biomedicine 118 (2), 134-146, 2015 | 15 | 2015 |
| Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM-BCB’17 H Mushtaq, F Liu, C Costa, G Liu, P Hofstee, Z Al-Ars ACM, 2017 | 12 | 2017 |
| Chemical-damage MINE: A database of curated and predicted spontaneous metabolic reactions JG Jeffryes, C Lerma-Ortiz, F Liu, A Golubev, TD Niehaus, ... Metabolic engineering 69, 302-312, 2022 | 11 | 2022 |
| ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction JP Faria, F Liu, JN Edirisinghe, N Gupta, SMD Seaver, AP Freiburger, ... bioRxiv, 2023.10. 04.556561, 2023 | 9 | 2023 |
| TranSyT, an innovative framework for identifying transport systems D Lagoa, JP Faria, F Liu, E Cunha, CS Henry, O Dias biorxiv, 2021.04. 29.441738, 2021 | 9 | 2021 |
| A KBase case study on genome-wide transcriptomics and plant primary metabolism in response to drought stress in Sorghum. S Kumari, V Kumar, K Beilsmith, SMD Seaver, S Canon, P Dehal, T Gu, ... Current plant biology 28, 100229, 2021 | 8 | 2021 |
| A model integration pipeline for the improvement of human genome-scale metabolic reconstructions V Vieira, J Ferreira, R Rodrigues, F Liu, M Rocha Journal of integrative bioinformatics 16 (1), 20180068, 2019 | 7 | 2019 |
| A functional microbiome catalogue crowdsourced from North American rivers MA Borton, BB McGivern, KR Willi, BJ Woodcroft, AC Mosier, ... Nature, 1-10, 2024 | 6 | 2024 |
| TranSyT, an innovative framework for identifying transport systems E Cunha, D Lagoa, JP Faria, F Liu, CS Henry, O Dias Bioinformatics 39 (8), btad466, 2023 | 6 | 2023 |
| The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes S Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, J Edirisinghe, M Mundy, ... bioRxiv, 2020.03. 31.018663, 2020 | 6 | 2020 |
| Evaluation and development of algorithms and computational tools for metabolic pathway optimization FAW Liu PQDT-Global, 2018 | 2 | 2018 |
| GROWdb US River Systems-Samples M Borton, K Wrighton, B Sadkhin, C Henry, E Wood-Charlson, F Liu, ... Colorado State University, Fort Collins, CO, 2022 | 1 | 2022 |
| MIYeastK: The Metabolic Integrated Yeast Knowledgebase S Santos, F Liu, C Costa, P Vilaça, M Rocha, I Rocha | 1 | 2016 |
| Elgokhy, sherin m. 31 estévez, carlos 9 fdez-riverola, florentino 49, 269 ferreira, joao 253 J Ferrnandes, JP Arrais, NF Azevedo, E Balsa-Canto, JR Banga, ... 8th International Conference on Practical Applications of Computational …, 0 | 1 | |
| Emergence and disruption of cooperativity in a denitrifying microbial community AV Carr, AE Otwell, KA Hunt, Y Chen, J Wilson, JP Faria, F Liu, ... bioRxiv, 2024.10. 24.620115, 2024 | | 2024 |
| Investigating carbon cycling microbial communities through Probabilistic Flux Balance Analysis: PrFBA A Freiburger, F Liu, K Tyo, C Henry 2024 Goldschmidt Conference, 2024 | | 2024 |
| A Functional Microbiome Catalog Crowdsourced from North American Rivers J Stegen, M Borton, BB McGivern, K Willi, BJ Woodcroft, DM Singleton, ... AGU Fall Meeting Abstracts 2023 (1931), B53E-1931, 2023 | | 2023 |
Christopher HenryComputational Biologist, Argonne National LaboratoryPreverjeni e-poštni naslov na mcs.anl.gov