Ramu Anandakrishnan

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Alexey OnufrievVirginia TechPreverjeni e-poštni naslov na vt.edu
Saeed IzadiGenentech IncPreverjeni e-poštni naslov na gene.com
Harold R GarnerChief Scientific Officer, Orbit GenomicsPreverjeni e-poštni naslov na orbitgenomics.com
Nicholas KinneyVirginia College of Osteopathic MedicinePreverjeni e-poštni naslov na vcom.vt.edu
Robin T VargheseEdward Via College of Osteopathic MedicinePreverjeni e-poštni naslov na vcom.vt.edu
Boris AguilarInstitute for Systems BiologyPreverjeni e-poštni naslov na systemsbiology.org
Andrew T. FenleyPreverjeni e-poštni naslov na vt.edu
Aleksander DrozdetskiGraduate Student, Virginia Polytechnic Institute and State UniversityPreverjeni e-poštni naslov na vt.edu
Wu FengProfessor of Computer Science, Virginia TechPreverjeni e-poštni naslov na vt.edu
Pawel MichalakEdward Via College of Osteopathic MedicinePreverjeni e-poštni naslov na vt.edu
Lin KangEdward Via College of Osteopathic Medicine (VCOM)Preverjeni e-poštni naslov na vt.edu
Daniel M. ZuckermanProfessor of Biomedical Engineering. Oregon Health & Science UniversityPreverjeni e-poštni naslov na ohsu.edu
Ross C WalkerPreverjeni e-poštni naslov na sdsc.edu
Mayank DagaDirector, Radeon Technology Group, AMDPreverjeni e-poštni naslov na amd.com
Tom ScoglandLawrence Livermore National LaboratoryPreverjeni e-poštni naslov na llnl.gov
Rory Donovan-MaiyeNovo NordiskPreverjeni e-poštni naslov na alumni.reed.edu
Andrew S WarrenResearch Assistant Professor at University of Virginia, Biocomplexity Institute & InitiativePreverjeni e-poštni naslov na vt.edu
Liqing ZhangProfessor @ Computer Science, Virginia TechPreverjeni e-poštni naslov na vt.edu
Jonathan WrenBioinformatics Core Director & Associate Member, Oklahoma Medical Research FoundationPreverjeni e-poštni naslov na omrf.org
Anne M. BrownVirginia TechPreverjeni e-poštni naslov na vt.edu

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Ramu Anandakrishnan

Edward Via College of Osteopathic Medicine

Preverjeni e-poštni naslov na vt.edu - Domača stran

Cancer Genomics Computational Biology Biophysics


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations R Anandakrishnan, B Aguilar, AV Onufriev Nucleic acids research 40 (W1), W537-W541, 2012	1745	2012
Building water models: a different approach S Izadi, R Anandakrishnan, AV Onufriev The journal of physical chemistry letters 5 (21), 3863-3871, 2014	1055	2014
Speed of conformational change: comparing explicit and implicit solvent molecular dynamics simulations R Anandakrishnan, A Drozdetski, RC Walker, AV Onufriev Biophysical journal 108 (5), 1153-1164, 2015	224	2015
Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core AT Fenley, R Anandakrishnan, YH Kidane, AV Onufriev Epigenetics & chromatin 11, 1-19, 2018	105	2018
Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations R Anandakrishnan, RT Varghese, NA Kinney, HR Garner PLoS computational biology 15 (3), e1006881, 2019	78	2019
Statistics and physical origins of pK and ionization state changes upon protein-ligand binding B Aguilar, R Anandakrishnan, JZ Ruscio, AV Onufriev Biophysical journal 98 (5), 872-880, 2010	65	2010
Analysis of basic clustering algorithms for numerical estimation of statistical averages in biomolecules R Anandakrishnan, A Onufriev Journal of Computational Biology 15 (2), 165-184, 2008	56	2008
Why computed protein folding landscapes are sensitive to the water model R Anandakrishnan, S Izadi, AV Onufriev Journal of chemical theory and computation 15 (1), 625-636, 2018	40	2018
Point charges optimally placed to represent the multipole expansion of charge distributions R Anandakrishnan, C Baker, S Izadi, AV Onufriev PloS one 8 (7), e67715, 2013	38	2013
Implicit solvent model for million-atom atomistic simulations: insights into the organization of 30-nm chromatin fiber S Izadi, R Anandakrishnan, AV Onufriev Journal of chemical theory and computation 12 (12), 5946-5959, 2016	36	2016
Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units R Anandakrishnan, TRW Scogland, AT Fenley, JC Gordon, W Feng, ... Journal of Molecular Graphics and Modelling 28 (8), 904-910, 2010	36	2010
Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations S Dash, NA Kinney, RT Varghese, HR Garner, W Feng, ... Scientific reports 9 (1), 1005, 2019	30	2019
An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions R Anandakrishnan, AV Onufriev Journal of Computational Chemistry 31 (4), 691-706, 2010	28	2010
Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process R Anandakrishnan, Z Zhang, R Donovan-Maiye, DM Zuckerman Proceedings of the National Academy of Sciences 113 (40), 11220-11225, 2016	27	2016
An n log n Generalized Born Approximation R Anandakrishnan, M Daga, AV Onufriev Journal of Chemical Theory and Computation 7 (3), 544-559, 2011	24	2011
Functional bias in molecular evolution rate of Arabidopsis thaliana AS Warren, R Anandakrishnan, L Zhang BMC Evolutionary Biology 10, 1-10, 2010	23	2010
Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU Q Al Hajri, S Dash, W Feng, HR Garner, R Anandakrishnan Scientific reports 10 (1), 2022, 2020	16	2020
ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women N Kinney, RT Varghese, R Anandakrishnan, HRS Garner Cancer informatics 16, 1176935117746644, 2017	13	2017
Biophysical comparison of ATP-driven proton pumping mechanisms suggests a kinetic advantage for the rotary process depending on coupling ratio R Anandakrishnan, DM Zuckerman PloS one 12 (3), e0173500, 2017	13	2017
TgTKL4 Is a Novel Kinase That Plays an Important Role in Toxoplasma Morphology and Fitness H Montano, R Anandkrishnan, VB Carruthers, RY Gaji Msphere 8 (2), e00649-22, 2023	11	2023

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