Spremljaj
Chao Cheng
Naslov
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Navedeno
Leto
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
175972012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
17252012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
14992011
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775, 2010
11592010
A cis-regulatory map of the Drosophila genome
N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ...
Nature 471 (7339), 527-531, 2011
5932011
Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9
M Wei, P Fabrizio, J Hu, H Ge, C Cheng, L Li, VD Longo
PLoS Genetics 4 (1), e13, 2008
5852008
Sir2 blocks extreme life-span extension
P Fabrizio, C Gattazzo, L Battistella, M Wei, C Cheng, K McGrew, ...
Cell 123 (4), 655-667, 2005
4952005
CircNet: a database of circular RNAs derived from transcriptome sequencing data
YC Liu, JR Li, CH Sun, E Andrews, RF Chao, FM Lin, SL Weng, SD Hsu, ...
Nucleic Acids Res., pii: gkv940, 2015
3482015
Comparative analysis of the transcriptome across distant species
M Gerstein, J Rozowsky, K Yan, D Wang, C Cheng, B Brown, C Davis, ...
Nature 512, 445–448, 2014
3412014
Modeling gene expression using chromatin features in various cellular contexts
X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ...
Genome biology 13, 1-17, 2012
3342012
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13, 1-22, 2012
3122012
A deep learning framework for modeling structural features of RNA-binding protein targets
S Zhang, J Zhou, H H, H Gong, L Chen, C Cheng, J Zeng
Nucleic Acids Res., gkv1025, 2015
3072015
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.
W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Cheng, ...
Genome Res. 21 (2), 245-254, 2011
2692011
Big data bioinformatics
C Greene, J Tan, M Ung, J Moore, C Cheng
J. Cell. Physiol., 2014
2592014
VISTA is a checkpoint regulator for naïve T cell quiescence and peripheral tolerance
MA ElTanbouly, Y Zhao, E Nowak, J Li, E Schaafsma, I Le Mercier, ...
Science 367 (6475), eaay0524, 2020
2442020
Comparative analysis of regulatory information and circuits across diverse species
A Boyle, C Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512, 453–456, 2014
2372014
Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines
Q Cao, C Anyansi, X Hu, L Xu, L Xiong, W Tang, MTS Mok, C Cheng, ...
Nature genetics 49 (10), 1428-1436, 2017
2322017
Immunoregulatory functions of VISTA
EC Nowak, JL Lines, FS Varn, J Deng, A Sarde, R Mabaera, A Kuta, ...
Immunological reviews 276 (1), 66-79, 2017
2252017
High-throughput proteomics: a methodological mini-review
M Cui, C Cheng, L Zhang
Laboratory investigation 102 (11), 1170-1181, 2022
2162022
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ...
Genome Research 22 (9), 1658-1667, 2012
2052012
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