Christina Bergonzo

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Soavtorji

Thomas E. Cheatham, IIIProfessor of Medicinal Chemistry; Director Research Computing; University of UtahPreverjeni e-poštni naslov na utah.edu
Carlos SimmerlingMarsha Laufer Chair in Physical & Quantitative Biology, SUNY Stony BrookPreverjeni e-poštni naslov na stonybrook.edu
Arthur P. GrollmanProfessor of Pharmacological Sciences, Stony Brook UniversityPreverjeni e-poštni naslov na stonybrook.edu
Daniel R. RoeLaboratory of Computational Biology, NHLBI, NIHPreverjeni e-poštni naslov na nih.gov
Niel M HenriksenUCSD, AtomwisePreverjeni e-poštni naslov na ucsd.edu
Haoquan LiState University of New York at Stony BrookPreverjeni e-poštni naslov na alumni.stonybrook.edu
Dmitry O. ZharkovNovosibirsk State UniversityPreverjeni e-poštni naslov na niboch.nsc.ru
Kathleen B HallWashington University Medical SchoolPreverjeni e-poštni naslov na wustl.edu
Rodrigo Galindo-MurilloPrincipal scientist - IONIS Pharmaceuticals, IncPreverjeni e-poštni naslov na ionisph.com
Adrian RoitbergFrank Harris Professor. Department of Chemistry. University of Florida.Preverjeni e-poštni naslov na ufl.edu
Zvi KelmanIBBRPreverjeni e-poštni naslov na umd.edu
Kun SongAstraZenecaPreverjeni e-poštni naslov na astrazeneca.com
Ross C WalkerPreverjeni e-poštni naslov na sdsc.edu
Jeffrey HudgensInstitute for Bioscience and Biotechnology Research, National Institute of Standards and TechnologyPreverjeni e-poštni naslov na nist.gov
Kyle W AndersonNational Institute of Standards and TechnologyPreverjeni e-poštni naslov na nist.gov
Elyssia S. GallagherBaylor UniversityPreverjeni e-poštni naslov na baylor.edu
Joy DunkersNational Institute of Standards and TechnologyPreverjeni e-poštni naslov na nist.gov
William Brad O'DellBiologist, Biosystems and Biomaterials Division, NISTPreverjeni e-poštni naslov na nist.gov
Mehmet BerkmenNew England BiolabsPreverjeni e-poštni naslov na neb.com
Hamed S. HayatshahiDepartment of Pharmacological Sciences, University of North Texas Health Science CenterPreverjeni e-poštni naslov na unthsc.edu

Spremljaj

Christina Bergonzo

Research Chemist, NIST/IBBR

Preverjeni e-poštni naslov na nist.gov - Domača stran

Chemistry Computational Chemistry Computational Biology Structural Biology


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Improved Force Field Parameters Lead to a Better Description of RNA Structure C Bergonzo, TEC III Journal of Chemical Theory and Computation 11 (9), 3969-3972, 2015	163	2015
Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields C Bergonzo, NM Henriksen, DR Roe, TE Cheatham RNA 21 (9), 1578-1590, 2015	152	2015
Multidimensional replica exchange molecular dynamics yields a converged ensemble of an RNA tetranucleotide C Bergonzo, NM Henriksen, DR Roe, JM Swails, AE Roitberg, ... Journal of chemical theory and computation 10 (1), 492-499, 2014	145	2014
Evaluation of Enhanced Sampling Provided by Accelerated Molecular Dynamics with Hamiltonian Replica Exchange Methods DR Roe, C Bergonzo, TE Cheatham III The Journal of Physical Chemistry B 118 (13), 3543-3552, 2014	119	2014
An improved reaction coordinate for nucleic acid base flipping studies K Song, AJ Campbell, C Bergonzo, C de los Santos, AP Grollman, ... Journal of Chemical Theory and Computation 5 (11), 3105-3113, 2009	75	2009
A partial nudged elastic band implementation for use with large or explicitly solvated systems C Bergonzo, AJ Campbell, RC Walker, C Simmerling International journal of quantum chemistry 109 (15), 3781-3790, 2009	70	2009
Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition NA Kuznetsov, C Bergonzo, AJ Campbell, H Li, GV Mechetin, ... Nucleic acids research 43 (1), 272-281, 2015	58	2015
Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics C Bergonzo, KB Hall, TE Cheatham III Journal of chemical theory and computation 12 (7), 3382-3389, 2016	53	2016
Energetic Preference of 8-oxoG Eversion Pathways in a DNA Glycosylase C Bergonzo, AJ Campbell, C de los Santos, AP Grollman, C Simmerling Journal of the American Chemical Society 133 (37), 14504-14506, 2011	48	2011
DNA deformation-coupled recognition of 8-oxoguanine: conformational kinetic gating in human DNA glycosylase H Li, AV Endutkin, C Bergonzo, L Fu, A Grollman, DO Zharkov, ... Journal of the American Chemical Society 139 (7), 2682-2692, 2017	41	2017
A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine–DNA glycosylase H Li, AV Endutkin, C Bergonzo, AJ Campbell, C de los Santos, ... Nucleic acids research 44 (2), 683-694, 2016	28	2016
Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg2+ Bound Structure in the Presence of Monovalent Ions C Bergonzo, KB Hall, TE Cheatham III The Journal of Physical Chemistry B 119 (38), 12355-12364, 2015	27	2015
Molecular Modeling of Nucleic Acid Structure R Galindo‐Murillo, C Bergonzo, TE Cheatham Current Protocols in Nucleic Acid Chemistry, 7.5. 1-7.5. 13, 2013	22*	2013
Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments C Bergonzo, A Grishaev, S Bottaro RNA 28 (7), 937-946, 2022	20	2022
HDX-MS and MD Simulations Provide Evidence for Stabilization of the IgG1—FcγRIa (CD64a) Immune Complex Through Intermolecular Glycoprotein Bonds KW Anderson, C Bergonzo, K Scott, IL Karageorgos, ES Gallagher, ... Journal of molecular biology 434 (2), 167391, 2022	18	2022
Structural Insights into DNA-Stabilized Silver Clusters D Schultz, RG Brinson, N Sari, JA Fagan, C Bergonzo, NJ Lin, JP Dunkers Soft Matter, 2019	15	2019
Characterization of the internal translation initiation region in monoclonal antibodies expressed in Escherichia coli EM Leith, WB O'Dell, N Ke, C McClung, M Berkmen, C Bergonzo, ... Journal of Biological Chemistry 294 (48), 18046-18056, 2019	14	2019
Atomic Model Structure of the NIST Monoclonal Antibody (NISTmAb) Reference Material C Bergonzo, DT Gallagher Journal of Research of the National Institute of Standards and Technology …, 2021	11	2021
Maximizing accuracy of RNA structure in refinement against residual dipolar couplings C Bergonzo, A Grishaev Journal of biomolecular NMR 73, 117-139, 2019	11	2019
Mg2+ binding promotes SLV as a scaffold in varkud satellite ribozyme SLI-SLV kissing loop junction C Bergonzo, TE Cheatham Biophysical Journal 113 (2), 313-320, 2017	11	2017

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