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Jacob Nearing
Jacob Nearing
Harvard School of Public Health
Preverjeni e-poštni naslov na broadinstitute.org
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Leto
Microbiome differential abundance methods produce different results across 38 datasets
JT Nearing, GM Douglas, MG Hayes, J MacDonald, DK Desai, N Allward, ...
Nature communications 13 (1), 342, 2022
6282022
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
JT Nearing, GM Douglas, AM Comeau, MGI Langille
PeerJ 6, e5364, 2018
359*2018
Identifying biases and their potential solutions in human microbiome studies
JT Nearing, AM Comeau, MGI Langille
Microbiome 9 (1), 113, 2021
177*2021
Harnessing the plant microbiome to promote the growth of agricultural crops
J Zhang, J Cook, JT Nearing, J Zhang, R Raudonis, BR Glick, ...
Microbiological Research 245, 126690, 2021
1762021
Assessing the variation within the oral microbiome of healthy adults
JT Nearing, V DeClercq, J Van Limbergen, MGI Langille
mSphere, 2020
672020
Infectious complications are associated with alterations in the gut microbiome in pediatric patients with acute lymphoblastic leukemia
JT Nearing, J Connors, S Whitehouse, J Van Limbergen, T Macdonald, ...
Frontiers in cellular and infection microbiology 9, 28, 2019
652019
Metagenomic functional shifts to plant induced environmental changes
SN Yurgel, JT Nearing, GM Douglas, MGI Langille
Frontiers in microbiology 10, 1682, 2019
432019
Plant-based diets and cancer risk: what is the evidence?
V DeClercq, JT Nearing, E Sweeney
Current nutrition reports 11 (2), 354-369, 2022
352022
Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions
V DeClercq, JT Nearing, MGI Langille
PLoS One 16 (12), e0261032, 2021
202021
Implications of taxonomic bias for microbial differential-abundance analysis
MR McLaren, JT Nearing, AD Willis, KG Lloyd, BJ Callahan
bioRxiv, 2022.08. 19.504330, 2022
132022
Investigating the oral microbiome in retrospective and prospective cases of prostate, colon, and breast cancer
JT Nearing, V DeClercq, MGI Langille
npj Biofilms and Microbiomes 9 (1), 23, 2023
122023
An in vivo genome‐wide shRNA screen identifies BCL6 as a targetable biomarker of paclitaxel resistance in breast cancer
M Sultan, JT Nearing, JM Brown, TT Huynh, BM Cruickshank, ...
Molecular oncology 15 (8), 2046-2064, 2021
112021
Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute …
KA Dunn, J Connors, JP Bielawski, JT Nearing, MGI Langille, ...
Leukemia & Lymphoma 62 (4), 927-936, 2021
92021
The effect of oral iron supplementation on gut microbial composition: a secondary analysis of a double-blind, randomized controlled trial among Cambodian women of reproductive age
E Finlayson-Trick, J Nearing, JAJ Fischer, Y Ma, S Wang, H Krouen, ...
Microbiology Spectrum 11 (3), e05273-22, 2023
72023
Oral microbial signatures associated with age and frailty in Canadian adults
V DeClercq, RJ Wright, JT Nearing, MGI Langille
Scientific Reports 14 (1), 9685, 2024
52024
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
T Branck, Z Hu, WA Nickols, AM Walsh, A Bhosle, MI Short, JT Nearing, ...
The ISME Journal 18 (1), wrae201, 2024
32024
MaAsLin 3: Refining and extending generalized multivariable linear models for meta-omic association discovery
WA Nickols, T Kuntz, J Shen, S Maharjan, H Mallick, EA Franzosa, ...
bioRxiv, 2024.12. 13.628459, 2024
2024
Evaluating metagenomic analyses for undercharacterized environments: what’s needed to light up the microbial dark matter?
WA Nickols, LJ McIver, A Walsh, Y Zhang, JT Nearing, F Asnicar, ...
bioRxiv, 2024
2024
IDENTIFCATION OF ROBUST BIOMARKERS USING MICROBIOME DNA SEQUENCING WITH A FOCUS ON THE ORAL MICROBIOME AND CANCER ASSOCIATIONS.
JT Nearing
Dalhousie University, 2022
2022
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