Susan P Holmes

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Paul J McMurdiePrincipal Bioinformatics Scientist at D2G OncologyPreverjeni e-poštni naslov na d2g-oncology.com
Benjamin CallahanAssociate Professor, NC State UniversityPreverjeni e-poštni naslov na ncsu.edu
David RelmanStanford UniversityPreverjeni e-poštni naslov na stanford.edu
Catherine BlishStanfordPreverjeni e-poštni naslov na stanford.edu
Robert ShaferProfessor of Medicine, Stanford UniversityPreverjeni e-poštni naslov na stanford.edu
Michael RosenHead of Computational Biology, D2G Oncology, Inc.Preverjeni e-poštni naslov na d2g-oncology.com
Kris SankaranUniversity of Wisconsin - MadisonPreverjeni e-poštni naslov na wisc.edu
Julia FukuyamaAssistant Professor, Department of Statistics, Indiana University BloomingtonPreverjeni e-poštni naslov na fhcrc.org
Diana M. ProctorUniversity of Texas Health Science Center at Houston | McGovern Medical SchoolPreverjeni e-poštni naslov na uth.tmc.edu
Christof SeilerMaastricht University / University Hospital Zurich / University of ZurichPreverjeni e-poštni naslov na usz.ch
Ronald J WongStanford University School of MedicinePreverjeni e-poštni naslov na stanford.edu
Deborah M GordonProfessor, Dept. of Biology, Stanford UniversityPreverjeni e-poštni naslov na stanford.edu
Thanmayi RanganathStanford School of MedicinePreverjeni e-poštni naslov na stanford.edu
Pratheepa JeganathanAssistant Professor, McMaster UniversityPreverjeni e-poštni naslov na mcmaster.ca
Claire DonnatUniversity of ChicagoPreverjeni e-poštni naslov na uchicago.edu
Alfred SpormannStanfordPreverjeni e-poštni naslov na stanford.edu
Lan Huong NguyenGoogle LLCPreverjeni e-poštni naslov na google.com
Daniela Aliaga GoltsmanAssociate Director, Metagenomi IncPreverjeni e-poštni naslov na berkeley.edu
Christine L. SunSenior research associate, Center of Microbiome Research, The Ohio State UniversityPreverjeni e-poštni naslov na osu.edu
Karen VogtmannUniversity of WarwickPreverjeni e-poštni naslov na warwick.ac.uk

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Susan P Holmes

Professor of Statistics, Stanford University

Preverjeni e-poštni naslov na stat.stanford.edu - Domača stran

Statistics and Biology Immunology Microbial Ecology Reproducible research MCMC


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
DADA2: High-resolution sample inference from Illumina amplicon data BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ... Nature methods 13 (7), 581-583, 2016	26920	2016
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data PJ McMurdie, S Holmes PloS one 8 (4), e61217, 2013	18104	2013
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	17766	2019
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis BJ Callahan, PJ McMurdie, SP Holmes The ISME Journal, 1-5, 2017	3226	2017
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. PJ McMurdie, S Holmes PLOS Computational Biology 10 (4), 2014	3009	2014
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data NM Davis, D Proctor, SP Holmes, DA Relman, BJ Callahan biorxiv, 2018	2612	2018
Temporal and spatial variation of the human microbiota during pregnancy DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ... Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015	1244	2015
Variability in the analysis of a single neuroimaging dataset by many teams R Botvinik-Nezer, F Holzmeister, CF Camerer, A Dreber, J Huber, ... Nature 582 (7810), 84-88, 2020	1085	2020
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes F1000Research 5, 1492, 2016	1063	2016
Bootstrap confidence levels for phylogenetic trees B Efron, E Halloran, S Holmes Proceedings of the National Academy of Sciences 93 (23), 13429-13429, 1996	1063	1996
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1043	2018
Geometry of the space of phylogenetic trees LJ Billera, SP Holmes, K Vogtmann Advances in Applied Mathematics 27 (4), 733-767, 2001	826	2001
Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013	669	2013
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes F Cruciani, P Santolamazza, P Shen, V Macaulay, P Moral, A Olckers, ... American journal of human genetics 70 (5), 1197, 2002	500	2002
Colonic contribution to uremic solutes PA Aronov, FJG Luo, NS Plummer, Z Quan, S Holmes, TH Hostetter, ... Journal of the American Society of Nephrology 22 (9), 1769-1776, 2011	460	2011
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle A Gorvitovskaia, SP Holmes, SM Huse Microbiome 4 (15), DOI: 10.1186/s40168-016-0160-7, 2016	453	2016
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women B Callahan, D DiGiulio, D Goltsman, C Sun, E Costello, P Jeganathan, ... PNAS, 201705899, 2017	407	2017
Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage M Yan, SJ Pamp, J Fukuyama, PH Hwang, DY Cho, S Holmes, ... Cell host & microbe 14 (6), 631-640, 2013	394	2013
Analysis of a nonreversible Markov chain sampler P Diaconis, S Holmes, RM Neal Annals of Applied Probability, 726-752, 2000	377	2000
The molecular architecture of the eukaryotic chaperonin TRiC/CCT A Leitner, LA Joachimiak, A Bracher, L Mönkemeyer, T Walzthoeni, ... Structure 20 (5), 814-825, 2012	337	2012

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