B. Jayaram

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19901991199219931994199519961997199819992000200120022003200420052006200720082009201020112012201320142015201620172018201920202021202220232024202559 58 52 41 60 64 101 74 152 166 154 180 167 164 215 149 193 160 174 131 208 813 383 408 364 345 399 400 400 435 474 463 481 485 499 85

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Soavtorji

Ashutosh ShandilyaGeorgia State University, ATL, USAPreverjeni e-poštni naslov na gsu.edu
Dr Tanya SinghLMCB, UCLPreverjeni e-poštni naslov na ucl.ac.uk
Shashank ShekharIIT DelhiPreverjeni e-poštni naslov na scfbio-iitd.res.in
Goutam MukherjeeHeidelberg UniversityPreverjeni e-poštni naslov na h-its.org
Aditya MittalProfessor of Biological Sciences, Indian Institute of Technology DelhiPreverjeni e-poštni naslov na bioschool.iitd.ac.in
Rahul KaushikBiotech Research Center, Technology Innovation Institute, Abu Dhabi, UAEPreverjeni e-poštni naslov na tii.ae
Ankita SinghTII, UAEPreverjeni e-poštni naslov na tii.ae
Matthew A. YoungUniversity of MichiganPreverjeni e-poštni naslov na umich.edu
James GomesProfessor, School of Biological Sciences, Indian Institute of Technology Delhi, IndiaPreverjeni e-poštni naslov na bioschool.iitd.ac.in
Nasimul HodaProfessor, Department of Chemistry, Jamai Millia Islamia, New Delhi-110025, India.Preverjeni e-poštni naslov na jmi.ac.in
Barry HonigColumbia UniversityPreverjeni e-poštni naslov na columbia.edu
Dr. Aditya Kumar PadhiSchool of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi, IndiaPreverjeni e-poštni naslov na iitbhu.ac.in
Avinash MishraIIT, DelhiPreverjeni e-poštni naslov na iitd.ac.in
Priyanka DhingraPalatin Technologies;Envisagenics; Weill Cornell Medical College NY; Indian Institute of TechnologyPreverjeni e-poštni naslov na palatin.com
kim sharpDept. of Biochemistry and BIophysics, University of PennsylvaniaPreverjeni e-poštni naslov na upenn.edu
Pradeep PantAssistant Prof, Bennett University, IndiaPreverjeni e-poštni naslov na uni-due.de
Pooja NarangArizona State UniversityPreverjeni e-poštni naslov na asu.edu
Abhilash JayarajDana Farber Cancer Institute, Harvard Medical SchoolPreverjeni e-poštni naslov na dfci.harvard.edu
Richard LaveryIBCP, CNRS / University of LyonPreverjeni e-poštni naslov na ibcp.fr
Ruchika BhatUniversity of ArizonaPreverjeni e-poštni naslov na email.arizona.edu

Spremljaj

B. Jayaram

Supercomputing Facility for Bioinformatics & Computational Biology, IIT Delhi

Preverjeni e-poštni naslov na chemistry.iitd.ac.in - Domača stran

Chemistry Computational Chemistry Molecular Bioinformatics Computer aided drug discovery


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: fractional occupancy of electronegative pockets MA Young, B Jayaram, DL Beveridge Journal of the American Chemical Society 119 (1), 59-69, 1997	458	1997
The electrostatic potential of B‐DNA B Jayaram, KA Sharp, B Honig Biopolymers: Original Research on Biomolecules 28 (5), 975-993, 1989	359	1989
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA R Lavery, K Zakrzewska, D Beveridge, TC Bishop, DA Case, ... Nucleic acids research 38 (1), 299-313, 2010	357	2010
Solvation free energy of biomacromolecules: Parameters for a modified generalized Born model consistent with the AMBER force field B Jayaram, D Sprous, DL Beveridge The Journal of Physical Chemistry B 102 (47), 9571-9576, 1998	339	1998
The role of water in protein-DNA recognition B Jayaram, T Jain Annu. Rev. Biophys. Biomol. Struct. 33 (1), 343-361, 2004	257	2004
Sanjeevini: a freely accessible web-server for target directed lead molecule discovery B Jayaram, T Singh, G Mukherjee, A Mathur, S Shekhar, V Shekhar BMC bioinformatics 13, 1-13, 2012	254	2012
Free energy analysis of the conformational preferences of A and B forms of DNA in solution B Jayaram, D Sprous, MA Young, DL Beveridge Journal of the American Chemical Society 120 (41), 10629-10633, 1998	231	1998
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ... Nucleic acids research 42 (19), 12272-12283, 2014	229	2014
Free energy calculations of ion hydration: an analysis of the Born model in terms of microscopic simulations B Jayaram, R Fine, K Sharp, B Honig The Journal of Physical Chemistry 93 (10), 4320-4327, 1989	225	1989
AADS - An Automated Active Site Identification, Docking, and Scoring Protocol for Protein Targets Based on Physicochemical Descriptors T Singh, D Biswas, B Jayaram Journal of chemical information and modeling 51 (10), 2515-2527, 2011	205	2011
Do water molecules mediate protein-DNA recognition? CK Reddy, A Das, B Jayaram Journal of Molecular Biology 314 (3), 619-632, 2001	192	2001
Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA B Jayaram, DL Beveridge Annual review of biophysics and biomolecular structure 25 (1), 367-394, 1996	179	1996
A molecular thermodynamic view of DNA–drug interactions: a case study of 25 minor-groove binders SA Shaikh, SR Ahmed, B Jayaram Archives of biochemistry and biophysics 429 (1), 81-99, 2004	166	2004
Local dielectric environment of B-DNA in solution: results from a 14 ns molecular dynamics trajectory MA Young, B Jayaram, DL Beveridge The Journal of Physical Chemistry B 102 (39), 7666-7669, 1998	164	1998
Inhibiting fungal multidrug resistance by disrupting an activator-Mediator interaction JL Nishikawa, A Boeszoermenyi, LA Vale-Silva, R Torelli, B Posteraro, ... Nature 530, 485-489, 2016	162	2016
ParDOCK: an all atom energy based Monte Carlo docking protocol for protein-ligand complexes A Gupta, A Gandhimathi, P Sharma, B Jayaram Protein and peptide letters 14 (7), 632-646, 2007	160	2007
Free energy analysis of protein–DNA binding: the EcoRI endonuclease–DNA complex B Jayaram, KJ McConnell, SB Dixit, DL Beveridge Journal of Computational Physics 151 (1), 333-357, 1999	156	1999
A modification of the generalized Born theory for improved estimates of solvation energies and shifts B Jayaram, Y Liu, DL Beveridge The Journal of chemical physics 109 (4), 1465-1471, 1998	153	1998
A phenomenological model for predicting melting temperatures of DNA sequences G Khandelwal, J Bhyravabhotla PloS one 5 (8), e12433, 2010	150	2010
Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins B Jayaram, K Bhushan, SR Shenoy, P Narang, S Bose, P Agrawal, ... Nucleic acids research 34 (21), 6195-6204, 2006	148	2006

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