| Charge hydration asymmetry: the basic principle and how to use it to test and improve water models A Mukhopadhyay, AT Fenley, IS Tolokh, AV Onufriev The journal of physical chemistry B 116 (32), 9776-9783, 2012 | 86 | 2012 |
| An anti-HER2 biparatopic antibody that induces unique HER2 clustering and complement-dependent cytotoxicity NE Weisser, M Sanches, E Escobar-Cabrera, J O’Toole, E Whalen, ... Nature Communications 14 (1), 1394, 2023 | 84 | 2023 |
| Statistical mechanics model for the dynamics of collective epigenetic histone modification H Zhang, XJ Tian, A Mukhopadhyay, KS Kim, J Xing Physical review letters 112 (6), 068101, 2014 | 61 | 2014 |
| Introducing charge hydration asymmetry into the generalized Born model A Mukhopadhyay, BH Aguilar, IS Tolokh, AV Onufriev Journal of Chemical Theory and Computation 10 (4), 1788-1794, 2014 | 40 | 2014 |
| Strongly bent double-stranded DNA: reconciling theory and experiment A Drozdetski, A Mukhopadhyay, AV Onufriev Frontiers in Physics 7, 195, 2019 | 21 | 2019 |
| Opinion formation on adaptive networks with intensive average degree B Schmittmann, A Mukhopadhyay Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 82 (6 …, 2010 | 20 | 2010 |
| Accurate evaluation of charge asymmetry in aqueous solvation A Mukhopadhyay, IS Tolokh, AV Onufriev The Journal of Physical Chemistry B 119 (20), 6092-6100, 2015 | 18 | 2015 |
| Multidimensional global optimization and robustness analysis in the context of protein–ligand binding N Forouzesh, A Mukhopadhyay, LT Watson, AV Onufriev Journal of Chemical Theory and Computation 16 (7), 4669-4684, 2020 | 16 | 2020 |
| ZymePackNet: rotamer-sampling free graph neural network method for protein sidechain prediction A Mukhopadhyay, A Kadan, B McMaster, JL McWhirter, SB Dixit BioRxiv, 2023.05. 05.539648, 2023 | 3 | 2023 |
| Systematic reverse engineering of network topologies: A case study of resettable bistable cellular responses D Mondal, E Dougherty, A Mukhopadhyay, A Carbo, G Yao, J Xing PloS one 9 (8), e105833, 2014 | 3 | 2014 |
| A numerical procedure for model reduction using the generalized Langevin equation formalism A Mukhopadhyay, J Xing arXiv preprint arXiv:1304.4908, 2013 | 2 | 2013 |
| Systems and methods for polymer sequence prediction JL Mcwhirter, G Lakatos, SB Dixit, A Mukhopadhyay, P Farber US Patent App. 18/705,910, 2025 | | 2025 |
| Systems and methods for polymer side-chain conformation prediction A Mukhopadhyay, SB Dixit, AG Ley, JL Mcwhirter, BJ McMaster, A Kadan US Patent App. 18/705,894, 2025 | | 2025 |
| HETERODIMERIC Fc VARIANTS SELECTIVE FOR Fc GAMMA RIIB E Escobar-Cabrera, G Lakatos, LG Presta, G Desjardins, ... US Patent App. 17/999,469, 2024 | | 2024 |
| SYSTEMS AND METHODS FOR POLYMER SIDE-CHAIN CONFORMATION PREDICTION A MUKHOPADHYAY, SB DIXIT, A GIL LEY, JL MCWHIRTER, ... US Patent WO/2023/070,229, 2023 | | 2023 |
| SYSTEMS AND METHODS FOR POLYMER SEQUENCE PREDICTION JL MCWHIRTER, G LAKATOS, SB DIXIT, A MUKHOPADHYAY, ... US Patent WO/2023/070,230, 2023 | | 2023 |
| Automated Protein Affinity Optimization using a 1D-CNN Deep Learning Model JL McWhirter, A Mukhopadhyay, P Farber, G Lakatos, S Dixit bioRxiv, 2023.04. 12.536512, 2023 | | 2023 |
| HETERODIMERIC FC VARIANTS SELECTIVE FOR FC GAMMA RIIB E Escobar-Cabrera, G Lakatos, LG Presta, G Desjardins, ... US Patent WO/2021/232,162, 2021 | | 2021 |
| Building accurate and fast implicit solvation models I Tolokh, A Mukhopadhyay, A Onufriev ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019 | | 2019 |
| Multidimensional optimization of the dielectric boundary for protein-ligand binding computations in implicit solvent N Forouzesh, A Mukhopadhyay, L Watson, A Onufriev ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 257, 2019 | | 2019 |
Alexey OnufrievVirginia TechPreverjeni e-poštni naslov na vt.edu
