Daniel McDonald

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDPreverjeni e-poštni naslov na ucsd.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoPreverjeni e-poštni naslov na ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityPreverjeni e-poštni naslov na nau.edu
Yoshiki Vázquez-BaezaBiomeSensePreverjeni e-poštni naslov na biomesense.com
Pieter C DorresteinUCSDPreverjeni e-poštni naslov na ucsd.edu
James T. MortonPreverjeni e-poštni naslov na gutzanalytics.com
Qiyun ZhuArizona State UniversityPreverjeni e-poštni naslov na asu.edu
Se Jin SongUniversity of California San DiegoPreverjeni e-poštni naslov na ucsd.edu
Zhenjiang Zech Xustate key lab of food science and resources, nuPreverjeni e-poštni naslov na ucsd.edu
Jesse RR ZaneveldAssociate Professor, Division of Biological Sciences, University of Washington, BothellPreverjeni e-poštni naslov na uw.edu
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiPreverjeni e-poštni naslov na mssm.edu
Jai Ram RideoutOne CodexPreverjeni e-poštni naslov na onecodex.com
Julia GoodrichGraduate Student, Cornell UniversityPreverjeni e-poštni naslov na cornell.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthPreverjeni e-poštni naslov na hsph.harvard.edu
Dan KnightsUniversity of MinnesotaPreverjeni e-poštni naslov na umn.edu
Tomasz KościółekSano Centre for Computational MedicinePreverjeni e-poštni naslov na sanoscience.org
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandPreverjeni e-poštni naslov na uq.edu.au
Embriette HydeFreelance Science Writer and Research ConsultantPreverjeni e-poštni naslov na drhydenotjekyll.com
Jack A GilbertUniversity of California, San DiegoPreverjeni e-poštni naslov na ucsd.edu
William A WaltersPost-doc, Cornell UniversityPreverjeni e-poštni naslov na colorado.edu

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Daniel McDonald

American Gut, Knight Lab, Department of Pediatrics, UCSD

Preverjeni e-poštni naslov na ucsd.edu - Domača stran

microbiome citizen science


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	36534	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	17780	2019
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	11053	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	9056	2013
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012	5482	2012
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	3560	2014
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2544	2017
A framework for human microbiome research Nature 486 (7402), 215-221, 2012	1784	2012
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	1700	2018
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), 10.1128/msystems. 00191-16, 2017	1557	2017
Strains, functions and dynamics in the expanded Human Microbiome Project J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ... Nature 550 (7674), 61-66, 2017	1285	2017
Dynamics of the human gut microbiome in inflammatory bowel disease J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ... Nature microbiology 2 (5), 1-7, 2017	1214	2017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	1043	2018
GABA-modulating bacteria of the human gut microbiota P Strandwitz, KH Kim, D Terekhova, JK Liu, A Sharma, J Levering, ... Nature microbiology 4 (3), 396-403, 2019	982	2019
Regional variation limits applications of healthy gut microbiome reference ranges and disease models Y He, W Wu, HM Zheng, P Li, D McDonald, HF Sheng, MX Chen, ... Nature medicine 24 (10), 1532-1535, 2018	840	2018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012	834	2012
Forensic identification using skin bacterial communities N Fierer, CL Lauber, N Zhou, D McDonald, EK Costello, R Knight Proceedings of the National Academy of Sciences 107 (14), 6477-6481, 2010	799	2010
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018	781	2018
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014	645	2014
Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018	617	2018

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