Spremljaj
C. Keith Cassidy
Naslov
Navedeno
Navedeno
Leto
Molecular dynamics simulations of large macromolecular complexes
JR Perilla, BC Goh, CK Cassidy, B Liu, RC Bernardi, T Rudack, H Yu, ...
Current opinion in structural biology 31, 64-74, 2015
4762015
PyLipID: A python package for analysis of protein–lipid interactions from molecular dynamics simulations
W Song, RA Corey, TB Ansell, CK Cassidy, MR Horrell, AL Duncan, ...
Journal of chemical theory and computation 18 (2), 1188-1201, 2022
1332022
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
CK Cassidy, BA Himes, FJ Alvarez, J Ma, G Zhao, JR Perilla, K Schulten, ...
Elife 4, e08419, 2015
1262015
Computational methodologies for real-space structural refinement of large macromolecular complexes
BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ...
Annual Review of Biophysics 45 (1), 253-278, 2016
822016
Dynamics of an LPS translocon induced by substrate and an antimicrobial peptide
F Fiorentino, JB Sauer, X Qiu, RA Corey, CK Cassidy, B Mynors-Wallis, ...
Nature chemical biology 17 (2), 187-195, 2021
612021
Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain
A Burt, CK Cassidy, P Ames, M Bacia-Verloop, M Baulard, K Huard, ...
Nature communications 11 (1), 743, 2020
602020
Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations
CK Cassidy, BA Himes, D Sun, J Ma, G Zhao, JS Parkinson, PJ Stansfeld, ...
Communications biology 3 (1), 24, 2020
552020
CheY's acetylation sites responsible for generating clockwise flagellar rotation in Escherichia coli
M Fraiberg, O Afanzar, CK Cassidy, A Gabashvili, K Schulten, Y Levin, ...
Molecular microbiology 95 (2), 231-244, 2015
432015
In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States
W Yang, CK Cassidy, P Ames, CA Diebolder, K Schulten, ...
MBio 10 (4), e00973-19, 2019
39*2019
Structure and activity of particulate methane monooxygenase arrays in methanotrophs
Y Zhu, CW Koo, CK Cassidy, MC Spink, T Ni, LC Zanetti-Domingues, ...
Nature communications 13 (1), 5221, 2022
322022
The unconventional cytoplasmic sensing mechanism for ethanol chemotaxis in Bacillus subtilis
P Tohidifar, GA Bodhankar, S Pei, CK Cassidy, HE Walukiewicz, ...
MBio 11 (5), 10.1128/mbio. 02177-20, 2020
30*2020
Structural basis for SMAC-mediated antagonism of caspase inhibition by the giant ubiquitin ligase BIRC6
L Dietz, CJ Ellison, C Riechmann, CK Cassidy, FD Felfoldi, ...
Science 379 (6637), 1112-1117, 2023
232023
High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers
R Ouyang, AR Costa, CK Cassidy, A Otwinowska, VCJ Williams, A Latka, ...
Nature Communications 13 (1), 7241, 2022
232022
Hexameric rings of the scaffolding protein CheW enhance response sensitivity and cooperativity in Escherichia coli chemoreceptor arrays
GE Piñas, MD DeSantis, CK Cassidy, JS Parkinson
Science signaling 15 (718), eabj1737, 2022
202022
CryoEM-based hybrid modeling approaches for structure determination
CK Cassidy, BA Himes, Z Luthey-Schulten, P Zhang
Current opinion in microbiology 43, 14-23, 2018
202018
A bacterial inflammation sensor regulates c-di-GMP signaling, adhesion, and biofilm formation
A Perkins, DA Tudorica, RD Teixeira, T Schirmer, L Zumwalt, OM Ogba, ...
MBio 12 (3), 10.1128/mbio. 00173-21, 2021
152021
Membraneless channels sieve cations in ammonia-oxidizing marine archaea
A von Kügelgen, CK Cassidy, S van Dorst, LL Pagani, C Batters, Z Ford, ...
Nature 630 (8015), 230-236, 2024
132024
LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins
TB Ansell, W Song, CE Coupland, L Carrique, RA Corey, AL Duncan, ...
Nature communications 14 (1), 7774, 2023
132023
Alternative Architecture of the E. coli Chemosensory Array
A Burt, CK Cassidy, PJ Stansfeld, I Gutsche
Biomolecules 11 (4), 495, 2021
112021
UVC inactivation of pathogenic samples suitable for cryo-EM analysis
JS Depelteau, L Renault, N Althof, CK Cassidy, LM Mendonça, GJ Jensen, ...
Communications biology 5 (1), 29, 2022
92022
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