J. Christian J. Ray

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Soavtorji

Gábor BalázsiHenry Laufer Professor of Physical & Quantitative Biology, Stony Brook UniversityPreverjeni e-poštni naslov na stonybrook.edu
Ian B. HogueAssistant Professor, Arizona State UniversityPreverjeni e-poštni naslov na asu.edu
Simeone MarinoUniversity of Michigan Medical SchoolPreverjeni e-poštni naslov na umich.edu
Tim F CooperSchool of Biological Sciences, University of AucklandPreverjeni e-poštni naslov na auckland.ac.nz
Oleg A. IgoshinProfessor of Bioengineering, Rice UniversityPreverjeni e-poštni naslov na rice.edu
Michael ManhartAssistant Professor, Rutgers UniversityPreverjeni e-poštni naslov na rutgers.edu
Alexandre MorozovProfessor of Physics, Rutgers UniversityPreverjeni e-poštni naslov na physics.rutgers.edu
Rhys M AdamsThe Francis Crick InstitutePreverjeni e-poštni naslov na crick.ac.uk
Abhinav TiwariPfizerPreverjeni e-poštni naslov na rice.edu
Jatin NarulaPfizer Inc., Cambridge MAPreverjeni e-poštni naslov na pfizer.com
Huijing WangCarnegie Mellon UniversityPreverjeni e-poštni naslov na andrew.cmu.edu
Jeffrey J. TaborProfessor of Bioengineering, Rice UniversityPreverjeni e-poštni naslov na rice.edu
Eric J. DeedsProfessor, UCLAPreverjeni e-poštni naslov na ucla.edu
Ameya Pranav JalihalPostdoctoral Researcher, Duke UniversityPreverjeni e-poštni naslov na duke.edu
Liskin Swint-KruseThe University of Kansas Medical CenterPreverjeni e-poštni naslov na kumc.edu
Scott WidmannTexas Southern UniversityPreverjeni e-poštni naslov na tsu.edu
Kelly N PhillipsUniversity of HoustonPreverjeni e-poštni naslov na uh.edu
ARNAB BANDYOPADHYAYDZNE/University BonnPreverjeni e-poštni naslov na dzne.de
Mikhail ProkopenkoProfessor, Centre for Complex Systems, University of SydneyPreverjeni e-poštni naslov na sydney.edu.au
Dominique ChuUniversity of KentPreverjeni e-poštni naslov na kent.ac.uk

Spremljaj

J. Christian J. Ray

Computational Biologist at Exosome Diagnostics / Bio-Techne

Preverjeni e-poštni naslov na bio-techne.com

computational biology theoretical biology bioinformatics


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
A methodology for performing global uncertainty and sensitivity analysis in systems biology S Marino, IB Hogue, CJ Ray, DE Kirschner Journal of theoretical biology 254 (1), 178-196, 2008	2897	2008
Synergy between individual TNF-dependent functions determines granuloma performance for controlling Mycobacterium tuberculosis infection JCJ Ray, JAL Flynn, DE Kirschner The Journal of Immunology 182 (6), 3706-3717, 2009	183	2009
Stress‐response balance drives the evolution of a network module and its host genome C González, JCJ Ray, M Manhart, RM Adams, D Nevozhay, AV Morozov, ... Molecular systems biology 11 (8), 827, 2015	108	2015
Bistable responses in bacterial genetic networks: designs and dynamical consequences A Tiwari, JCJ Ray, J Narula, OA Igoshin Mathematical biosciences 231 (1), 76-89, 2011	84	2011
Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds PLoS genetics 8 (1), e1002444, 2012	74	2012
Adaptable functionality of transcriptional feedback in bacterial two-component systems JCJ Ray, OA Igoshin PLoS Comput Biol 6 (2), e1000676-e1000676, 2010	72	2010
The timing of TNF and IFN-γ signaling affects macrophage activation strategies during Mycobacterium tuberculosis infection JCJ Ray, J Wang, J Chan, DE Kirschner Journal of theoretical biology 252 (1), 24-38, 2008	63	2008
Non-transcriptional regulatory processes shape transcriptional network dynamics JCJ Ray, JJ Tabor, OA Igoshin Nature Reviews Microbiology 9 (11), 817-828, 2011	58	2011
A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data SM Cooley, T Hamilton, SD Aragones, JCJ Ray, EJ Deeds Biorxiv, 689851, 2019	47	2019
Cellular growth arrest and persistence from enzyme saturation JCJ Ray, ML Wickersheim, AP Jalihal, YO Adeshina, TF Cooper, ... PLoS Computational Biology 12 (3), e1004825, 2016	40	2016
Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization JCJ Ray, OA Igoshin Public Library of Science 8 (8), e1002672, 2012	31	2012
Amino acid positions subject to multiple co‐evolutionary constraints can be robustly identified by their eigenvector network centrality scores DJ Parente, JCJ Ray, L Swint‐Kruse Proteins: Structure, Function, and Bioinformatics, 2015	24	2015
The effect of phospholipids and mucin on bacterial internalization in an enterocyte cell culture model N Usui, C Ray, H Okuyama, RA Drongowski, AG Coran, CM Harmon Ped Surg Int 15, 150-154, 1999	23	1999
Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic … KN Phillips, S Widmann, HY Lai, J Nguyen, JCJ Ray, G Balázsi, ... Mbio 10 (6), 10.1128/mbio. 02232-19, 2019	18	2019
Requirement for multiple activation signals by anti-inflammatory feedback in macrophages JCJ Ray, DE Kirschner Journal of theoretical biology 241 (2), 276-294, 2006	15	2006
Computation by natural systems D Chu, M Prokopenko, JCJ Ray Interface Focus 8 (6), 20180058, 2018	8	2018
Lineage space and the propensity of bacterial cells to undergo growth transitions A Bandyopadhyay, H Wang, JCJ Ray PLOS Computational Biology 14 (8), e1006380, 2018	6	2018
Survival of phenotypic information during cellular growth transitions JCJ Ray ACS Synthetic Biology 5 (8), 810-816, 2016	6	2016
A framework for evaluating edited cell libraries created by massively parallel genome engineering S Cawley, E Abbate, CG Abraham, S Alvarez, M Barber, S Bolte, J Bruand, ... bioRxiv, 2021.09. 23.458228, 2021	2	2021
Signatures of antibiotic tolerance and persistence in response to divergent stresses H Wang, GW McElfresh, N Wijesuriya, A Podgorny, AD Hecht, JCJ Ray bioRxiv, 2023.02. 05.527212, 2023		2023

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