Paulo Cesar Telles de Souza

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Soavtorji

Siewert J. MarrinkProfessor of Molecular Dynamics, University of GroningenPreverjeni e-poštni naslov na rug.nl
Munir S. SkafInstitute of Chemistry, University of Campinas - UNICAMPPreverjeni e-poštni naslov na iqm.unicamp.br
Riccardo AlessandriKU LeuvenPreverjeni e-poštni naslov na kuleuven.be
Igor PolikarpovProfessor TitularPreverjeni e-poštni naslov na ifsc.usp.br
Bart M. H. BruininksUniversity of GroningenPreverjeni e-poštni naslov na rug.nl
Fabian GrünewaldHeidelberg Institute for Theoretical StudiesPreverjeni e-poštni naslov na h-its.org
Sebastian ThallmairFrankfurt Institute for Advanced StudiesPreverjeni e-poštni naslov na fias.uni-frankfurt.de
D. Peter TielemanCanada Research Chair in Molecular Simulation, University of CalgaryPreverjeni e-poštni naslov na ucalgary.ca
Manuel N. MeloITQB NOVAPreverjeni e-poštni naslov na itqb.unl.pt
Helgi I. IngólfssonLawrence Livermore National LaboratoryPreverjeni e-poštni naslov na llnl.gov
Luís Borges-AraújoResearcher (ENS de Lyon, CNRS)Preverjeni e-poštni naslov na ens-lyon.fr
Leandro MartínezInstitute of Chemistry - State University of CampinasPreverjeni e-poštni naslov na iqm.unicamp.br
Jonathan BarnoudCentro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS) Universidade de Santiago dePreverjeni e-poštni naslov na usc.es
Mark S.P. SansomUniversity of OxfordPreverjeni e-poštni naslov na bioch.ox.ac.uk
Rodrigo L SilveiraInstitute of Chemistry - Federal University of Rio de JaneiroPreverjeni e-poštni naslov na iq.ufrj.br
Valentina CorradiResearch Associate, University of CalgaryPreverjeni e-poštni naslov na ucalgary.ca
Sangwook WuPukyong National UniversityPreverjeni e-poštni naslov na pukyong.ac.kr
Syma KhalidUniversity of OxfordPreverjeni e-poštni naslov na bioch.ox.ac.uk
Melina MottinResearch Associate, Universidade Federal de GoiasPreverjeni e-poštni naslov na ufg.br
Vittorio LimongelliUSI Lugano (Switzerland)Preverjeni e-poštni naslov na usi.ch

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Paulo Cesar Telles de Souza

Senior Researcher at LBMC and group leader at CBPsmn (ENS de Lyon, CNRS)

Preverjeni e-poštni naslov na ens-lyon.fr

Computational Chemistry Molecular Modelling Molecular Biophysics Coarse Graining


Naslov Razvrsti po navedbah Razvrsti po letniku Razvrsti po naslovu	Navedeno Navedeno	Leto
Martini 3: a general purpose force field for coarse-grained molecular dynamics PCT Souza, R Alessandri, J Barnoud, S Thallmair, I Faustino, ... Nature Methods 18 (4), 382-388, 2021	947	2021
Computational modeling of realistic cell membranes SJ Marrink, V Corradi, PCT Souza, HI Ingolfsson, DP Tieleman, ... Chemical Reviews 119 (9), 6184-6226, 2019	660	2019
Enhancing molecular n‐type doping of donor–acceptor copolymers by tailoring side chains J Liu, L Qiu, R Alessandri, X Qiu, G Portale, JJ Dong, W Talsma, G Ye, ... Advanced Materials 30 (7), 1704630, 2018	300	2018
Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) γ activators and pan-PPAR partial agonists MV Liberato, AS Nascimento, SD Ayers, JZ Lin, A Cvoro, RL Silveira, ... PloS One 7 (5), e36297, 2012	228	2012
Pitfalls of the Martini Model R Alessandri, PCT Souza, S Thallmair, MN Melo, AH de Vries, SJ Marrink Journal of Chemical Theory and Computation 15 (10), 5448-5460, 2019	215	2019
CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ... Journal of computational chemistry 38 (27), 2354-2363, 2017	195	2017
Protein–ligand binding with the coarse-grained Martini model PCT Souza, S Thallmair, P Conflitti, C Ramírez-Palacios, R Alessandri, ... Nature Communications 11 (1), 3714, 2020	193	2020
Two decades of Martini: Better beads, broader scope SJ Marrink, L Monticelli, MN Melo, R Alessandri, DP Tieleman, ... Wiley Interdisciplinary Reviews: Computational Molecular Science 13 (1), e1620, 2023	171	2023
GQ-16, a novel peroxisome proliferator-activated receptor γ (PPARγ) ligand, promotes insulin sensitization without weight gain AA Amato, S Rajagopalan, JZ Lin, BM Carvalho, ACM Figueira, J Lu, ... Journal of Biological Chemistry 287 (33), 28169-28179, 2012	139	2012
Martini 3 coarse‐grained force field: small molecules R Alessandri, J Barnoud, AS Gertsen, I Patmanidis, AH De Vries, ... Advanced Theory and Simulations 5 (1), 2100391, 2022	120	2022
Molecular mechanism of peroxisome proliferator-activated receptor α activation by WY14643: a new mode of ligand recognition and receptor stabilization A Bernardes, PCT Souza, JRC Muniz, CG Ricci, SD Ayers, NM Parekh, ... Journal of molecular biology 425 (16), 2878-2893, 2013	115	2013
Bottom-up fabrication of a proteasome–nanopore that unravels and processes single proteins S Zhang, G Huang, RCA Versloot, BMH Bruininks, PCT de Souza, ... Nature chemistry 13 (12), 1192-1199, 2021	114	2021
Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage AM Liaci, B Steigenberger, PCT de Souza, S Tamara, M Gröllers-Mulderij, ... Molecular cell 81 (19), 3934-3948. e11, 2021	92	2021
Martinize2 and vermouth: Unified framework for topology generation PC Kroon, F Grünewald, J Barnoud, M van Tilburg, PCT Souza, ... Elife, 2023	88*	2023
Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials F Grünewald, R Alessandri, PC Kroon, L Monticelli, PCT Souza, ... Nature communications 13 (1), 68, 2022	86	2022
A molecular view on the escape of lipoplexed DNA from the endosome BMH Bruininks, PCT Souza, H Ingolfsson, SJ Marrink Elife 9, e52012, 2020	79	2020
Titratable Martini model for constant pH simulations F Grünewald, PCT Souza, H Abdizadeh, J Barnoud, AH de Vries, ... The Journal of chemical physics 153 (2), 2020	78	2020
High performance collision cross section calculation—HPCCS L Zanotto, G Heerdt, PCT Souza, G Araujo, MS Skaf Journal of computational chemistry 39 (21), 1675-1681, 2018	71	2018
Coacervate formation studied by explicit solvent coarse-grain molecular dynamics with the Martini model M Tsanai, PWJM Frederix, CFE Schroer, PCT Souza, SJ Marrink Chemical Science 12 (24), 8521-8530, 2021	67	2021
Martini coarse-grained models of imidazolium-based ionic liquids: from nanostructural organization to liquid-liquid extraction LI Vazquez-Salazar, M Selle, AH De Vries, SJ Marrink, PCT Souza Green Chemistry, 2020	67	2020

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