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Richard Lavery
Richard Lavery
IBCP, CNRS / University of Lyon
Preverjeni e-poštni naslov na ibcp.fr - Domača stran
Naslov
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Navedeno
Leto
DNA: an extensible molecule
P Cluzel, A Lebrun, C Heller, R Lavery, JL Viovy, D Chatenay, F Caron
Science 271 (5250), 792-794, 1996
13461996
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
R Lavery, H Sklenar
Journal of Biomolecular Structure and Dynamics 6 (1), 63-91, 1988
11281988
Defining the structure of irregular nucleic acids: conventions and principles
R Lavery, H Sklenar
Journal of Biomolecular Structure and Dynamics 6 (4), 655-667, 1989
8991989
Conformational analysis of nucleic acids revisited: Curves+
R Lavery, M Moakher, JH Maddocks, D Petkeviciute, K Zakrzewska
Nucleic acids research 37 (17), 5917-5929, 2009
7962009
Stretched and overwound DNA forms a Pauling-like structure with exposed bases
JF Allemand, D Bensimon, R Lavery, V Croquette
Proceedings of the National Academy of Sciences 95 (24), 14152-14157, 1998
5021998
A new approach to the rapid determination of protein side chain conformations
P Tuffery, C Etchebest, S Hazout, R Lavery
Journal of Biomolecular structure and dynamics 8 (6), 1267-1289, 1991
4491991
Energetic coupling between DNA bending and base pair opening.
J Ramstein, R Lavery
Proceedings of the National Academy of Sciences 85 (19), 7231-7235, 1988
3941988
A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA
R Lavery, K Zakrzewska, D Beveridge, TC Bishop, DA Case, ...
Nucleic acids research 38 (1), 299-313, 2010
3572010
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d (CpG) steps
DL Beveridge, G Barreiro, KS Byun, DA Case, TE Cheatham, SB Dixit, ...
Biophysical journal 87 (6), 3799-3813, 2004
3302004
Structure and dynamics of a 197 bp nucleosome in complex with linker histone H1
J Bednar, I Garcia-Saez, R Boopathi, AR Cutter, G Papai, A Reymer, ...
Molecular cell 66 (3), 384-397. e8, 2017
3242017
Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d (CGCGAATTCGCG) double helix:“curves”, dials and windows
G Ravishanker, S Swaminathan, DL Beveridge, R Lavery, H Sklenar
Journal of Biomolecular Structure and Dynamics 6 (4), 669-699, 1989
3091989
Modelling extreme stretching of DNA
A Lebrun, R Lavery
Nucleic acids research 24 (12), 2260-2267, 1996
2811996
Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique …
SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, ...
Biophysical journal 89 (6), 3721-3740, 2005
2792005
CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures
C Blanchet, M Pasi, K Zakrzewska, R Lavery
Nucleic acids research 39 (suppl_2), W68-W73, 2011
2442011
JUMNA (junction minimisation of nucleic acids)
R Lavery, K Zakrzewska, H Sklenar
Computer Physics Communications 91 (1-3), 135-158, 1995
2311995
μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
M Pasi, JH Maddocks, D Beveridge, TC Bishop, DA Case, T Cheatham III, ...
Nucleic acids research 42 (19), 12272-12283, 2014
2292014
On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes
A Mukherjee, R Lavery, B Bagchi, JT Hynes
Journal of the American Chemical Society 130 (30), 9747-9755, 2008
2212008
Methylene blue binding to DNA with alternating GC base sequence: a modeling study
R Rohs, H Sklenar, R Lavery, B Röder
Journal of the American Chemical Society 122 (12), 2860-2866, 2000
2162000
Kinking occurs during molecular dynamics simulations of small DNA minicircles
F Lankaš, R Lavery, JH Maddocks
Structure 14 (10), 1527-1534, 2006
2022006
The flexibility of the nucleic acids:(II) The calculation of internal energy and applications to mononucleotide repeat DNA
R Lavery, H Sklenar, K Zakrzewska, B Pullman
Journal of Biomolecular Structure and Dynamics 3 (5), 989-1014, 1986
2021986
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