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Christian L. Müller
Christian L. Müller
Helmholtz Munich; Ludwig-Maximilians-Universität München; Flatiron Institute, New York
Подтвержден адрес электронной почты в домене helmholtz-munich.de - Главная страница
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Процитировано
Год
Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS computational biology 11 (5), e1004226, 2015
14712015
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics, 1-23, 2023
5972023
NetCoMi: network construction and comparison for microbiome data in R
S Peschel, CL Müller, E von Mutius, AL Boulesteix, M Depner
Briefings in Bioinformatics, 2020
3222020
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
2632016
scCODA is a Bayesian model for compositional single-cell data analysis
M Buettner, J Ostner, CL Mueller, FJ Theis, B Schubert
Nature communications 12 (1), 6876, 2021
2252021
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ...
Genome medicine 8, 1-20, 2016
1952016
Fungi stabilize connectivity in the lung and skin microbial ecosystems
L Tipton, CL Müller, ZD Kurtz, L Huang, E Kleerup, A Morris, R Bonneau, ...
Microbiome 6, 1-14, 2018
1842018
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
VE Ruiz, T Battaglia, ZD Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, ...
Nature communications 8 (1), 518, 2017
1382017
Microbial networks in SPRING-Semi-parametric rank-based correlation and partial correlation estimation for quantitative microbiome data
G Yoon, I Gaynanova, CL Müller
Frontiers in genetics 10, 516, 2019
1112019
4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments
R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ...
PLoS computational biology 12 (3), e1004780, 2016
982016
Inverse Dirichlet weighting enables reliable training of physics informed neural networks
S Maddu, D Sturm, CL Müller, IF Sbalzarini
Machine Learning: Science and Technology 3 (1), 015026, 2022
922022
Don't fall for tuning parameters: tuning-free variable selection in high dimensions with the TREX
J Lederer, C Müller
Proceedings of the AAAI conference on artificial intelligence 29 (1), 2015
782015
Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing
T Äijö, CL Müller, R Bonneau
Bioinformatics 34 (3), 372-380, 2018
772018
Robust classification of protein variation using structural modelling and large-scale data integration
EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ...
Nucleic acids research 44 (6), 2501-2513, 2016
742016
Optimization of convex functions with random pursuit
SU Stich, CL Muller, B Gartner
SIAM Journal on Optimization 23 (2), 1284-1309, 2013
652013
Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes
CL Muller, B Baumgartner, IF Sbalzarini
Evolutionary Computation, 2009. CEC'09. IEEE Congress on, 2685-2692, 2009
652009
The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli
H Temmel, C Müller, M Sauert, O Vesper, A Reiss, J Popow, J Martinez, ...
Nucleic acids research 45 (8), 4708-4721, 2017
632017
Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis
CL Müller, IF Sbalzarini
European conference on the applications of evolutionary computation, 294-303, 2011
612011
Shrinkage improves estimation of microbial associations under different normalization methods
M Badri, ZD Kurtz, R Bonneau, CL Müller
NAR genomics and bioinformatics 2 (4), lqaa100, 2020
58*2020
Stability selection enables robust learning of differential equations from limited noisy data
S Maddu, BL Cheeseman, IF Sbalzarini, CL Müller
Proceedings of the Royal Society A 478 (2262), 20210916, 2022
552022
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