| Enrichr: a comprehensive gene set enrichment analysis web server 2016 update MV Kuleshov, MR Jones, AD Rouillard, NF Fernandez, Q Duan, Z Wang, ... Nucleic acids research 44 (W1), W90-W97, 2016 | 8831 | 2016 |
| Gene set knowledge discovery with Enrichr Z Xie, A Bailey, MV Kuleshov, DJB Clarke, JE Evangelista, SL Jenkins, ... Current protocols 1 (3), e90, 2021 | 2231 | 2021 |
| ChEA3: transcription factor enrichment analysis by orthogonal omics integration AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz, V Utti, ... Nucleic acids research 47 (W1), W212-W224, 2019 | 703 | 2019 |
| Massive mining of publicly available RNA-seq data from human and mouse A Lachmann, D Torre, AB Keenan, KM Jagodnik, HJ Lee, L Wang, ... Nature communications 9 (1), 1366, 2018 | 684 | 2018 |
| The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ... Cell systems 6 (1), 13-24, 2018 | 424 | 2018 |
| Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Nature communications 7 (1), 12846, 2016 | 290 | 2016 |
| Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data A Koleti, R Terryn, V Stathias, C Chung, DJ Cooper, JP Turner, D Vidović, ... Nucleic acids research 46 (D1), D558-D566, 2018 | 177 | 2018 |
| Appyters: Turning Jupyter Notebooks into data-driven web apps DJB Clarke, M Jeon, DJ Stein, N Moiseyev, E Kropiwnicki, C Dai, Z Xie, ... Patterns 2 (3), 2021 | 96 | 2021 |
| Correcting under-reported COVID-19 case numbers A Lachmann MedRxiv, 2020.03. 14.20036178, 2020 | 82 | 2020 |
| Optimization and evaluation of a proportional derivative controller for planar arm movement KM Jagodnik, AJ van den Bogert Journal of Biomechanics 43 (6), 1086-1091, 2010 | 77 | 2010 |
| Training an actor-critic reinforcement learning controller for arm movement using human-generated rewards KM Jagodnik, PS Thomas, AJ van den Bogert, MS Branicky, RF Kirsch IEEE Transactions on Neural Systems and Rehabilitation Engineering 25 (10 …, 2017 | 71 | 2017 |
| The COVID-19 drug and gene set library MV Kuleshov, DJ Stein, DJB Clarke, E Kropiwnicki, KM Jagodnik, A Bartal, ... Patterns 1 (6), 2020 | 59 | 2020 |
| FAIRshake: Toolkit to evaluate the FAIRness of research digital resources DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ... Cell systems 9 (5), 417-421, 2019 | 59 | 2019 |
| SigCom LINCS: data and metadata search engine for a million gene expression signatures JE Evangelista, DJB Clarke, Z Xie, A Lachmann, M Jeon, K Chen, ... Nucleic acids research 50 (W1), W697-W709, 2022 | 51 | 2022 |
| Enrichr: A comprehensive gene set enrichment analysis web server 2016 update., 2016, 44, pp MV Kuleshov, MR Jones, AD Rouillard, NF Fernandez, Q Duan, Z Wang, ... W90-W97. DOI: https://doi. org/10.1093/nar/gkw377, 0 | 51 | |
| Connectivity mapping: methods and applications AB Keenan, ML Wojciechowicz, Z Wang, KM Jagodnik, SL Jenkins, ... Annual Review of Biomedical Data Science 2 (1), 69-92, 2019 | 49 | 2019 |
| smartAPI: towards a more intelligent network of web APIs A Zaveri, S Dastgheib, C Wu, T Whetzel, R Verborgh, P Avillach, G Korodi, ... The Semantic Web: 14th International Conference, ESWC 2017, Portorož …, 2017 | 48 | 2017 |
| Correcting under-reported COVID-19 case numbers: estimating the true scale of the pandemic KM Jagodnik, F Ray, FM Giorgi, A Lachmann medRxiv, 2020.03. 14.20036178, 2020 | 45 | 2020 |
| Application of the actor-critic architecture to functional electrical stimulation control of a human arm PS Thomas, A van den Bogert, K Jagodnik, M Branicky Twenty-First IAAI Conference, 2009 | 38 | 2009 |
| Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures Z Wang, E He, K Sani, KM Jagodnik, MC Silverstein, A Ma’ayan Bioinformatics 35 (7), 1247-1248, 2019 | 36 | 2019 |
