Общедоступные статьи - Anna NiarakisПодробнее...
23 статьи доступны в некоторых источниках
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ...
Scientific data 7 (1), 136, 2020
Финансирование: US National Institutes of Health
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
Финансирование: US Department of Energy, US National Institutes of Health, European …
Building digital twins of the human immune system: toward a roadmap
R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ...
NPJ digital medicine 5 (1), 64, 2022
Финансирование: US National Science Foundation, US Department of Defense, US National …
Automated inference of Boolean models from molecular interaction maps using CaSQ
SS Aghamiri, V Singh, A Naldi, T Helikar, S Soliman, A Niarakis
Bioinformatics, 2020
Финансирование: US National Institutes of Health, Agence Nationale de la Recherche
Community-driven roadmap for integrated disease maps
M Ostaszewski, S Gebel, I Kuperstein, A Mazein, A Zinovyev, U Dogrusoz, ...
Briefings in bioinformatics 20 (2), 659-670, 2019
Финансирование: Agence Nationale de la Recherche
Boolean modelling as a logic-based dynamic approach in systems medicine
AA Hemedan, A Niarakis, R Schneider, M Ostaszewski
Computational and structural biotechnology journal 20, 3161-3172, 2022
Финансирование: European Commission
A practical guide to mechanistic systems modeling in biology using a logic-based approach
A Niarakis, T Helikar
Briefings in bioinformatics 22 (4), bbaa236, 2021
Финансирование: US National Institutes of Health
Computational systems biology approach for the study of rheumatoid arthritis: from a molecular map to a dynamical model
V Singh, M Ostaszewski, GD Kalliolias, G Chiocchia, R Olaso, ...
Genomics and computational biology 4 (1), e100050, 2017
Финансирование: US National Institutes of Health
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
A Niarakis, D Waltemath, J Glazier, F Schreiber, SM Keating, D Nickerson, ...
Briefings in Bioinformatics 23 (4), bbac212, 2022
Финансирование: US National Institutes of Health, German Research Foundation, National …
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop
A Niarakis, M Kuiper, M Ostaszewski, RS Malik Sheriff, C Casals-Casas, ...
Briefings in bioinformatics 22 (2), 1848-1859, 2021
Финансирование: US National Institutes of Health, National Institute of Health and Medical …
Proteomic analysis of the SH2domain-containing leukocyte protein of 76 kDa (SLP76) interactome
Y Bounab, B Iannascoli, L Grieco, Y Couté, A Niarakis, R Roncagalli, ...
Molecular & Cellular Proteomics 12 (10), 2874-2889, 2013
Финансирование: National Institute of Health and Medical Research, France, A*Star, Singapore
Data integration in logic-based models of biological mechanisms
B Hall, A Niarakis
Current Opinion in Systems Biology 28, 2021
Финансирование: Royal Society UK
Detection of a latent soluble form of membrane type 1 matrix metalloprotease bound with tissue inhibitor of matrix metalloproteinases‐2 in periprosthetic tissues and fluids …
A Niarakis, E Giannopoulou, P Ravazoula, E Panagiotopoulos, ...
The FEBS Journal 280 (24), 6541-6555, 2013
Финансирование: Wellcome Trust
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems
A Dräger, T Helikar, M Barberis, M Birtwistle, L Calzone, C Chaouiya, ...
Bioinformatics, 2021
Финансирование: US National Institutes of Health, German Research Foundation, European …
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches
A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ...
Frontiers in Immunology 14, 1282859, 2024
Финансирование: US National Institutes of Health, German Research Foundation, European …
Computational modelling of immunological mechanisms: from statistical approaches to interpretable machine learning
MR Martínez, M Barberis, A Niarakis
ImmunoInformatics 12, 100029, 2023
Финансирование: European Commission
Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritima
P Soudier, DR Pinzon, T Reif-Trauttmansdorff, H Hijazi, M Cherrière, ...
Synthetic and Systems Biotechnology 7 (2), 791-801, 2022
Финансирование: Agence Nationale de la Recherche
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting
A Niarakis, J Thakar, M Barberis, M Rodríguez Martínez, T Helikar, ...
Bioinformatics 38 (21), 4990-4993, 2022
Финансирование: US National Institutes of Health, German Research Foundation, European …
ECCB2022: the 21st European Conference on Computational Biology
S Capella-Gutierrez, E Alloza, L Rubinat-Ripoll, ...
Bioinformatics 38 (Supplement_2), ii1-ii4, 2022
Финансирование: Government of Spain
PhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework allows for the uncovering of mechanistic insights
V Noël, J Carbonell, MP de Leon, S Soliman, A Niarakis, L Calzone, ...
Финансирование: European Commission
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